CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

cytosol 5
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218
nucleus: 27291164
nucleus: 28499913

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH33956	Soybean	endoplasmic reticulum	96.25	96.25
Bra021324.1-P	Field mustard	cytosol	78.84	79.93
CDY43488	Canola	cytosol	78.5	79.58
CDY17559	Canola	cytoskeleton, nucleus, peroxisome	77.82	79.44
KRH68573	Soybean	cytosol	72.7	77.45
KRG96884	Soybean	cytosol	77.82	77.29
KRH68572	Soybean	cytosol	78.84	77.0
KRH68615	Soybean	cytosol, nucleus, plastid	57.68	76.47
GSMUA_Achr4P24690_001	Banana	cytosol	72.01	70.81
AT1G54870.2	Thale cress	plastid	77.82	67.66
GSMUA_Achr4P29030_001	Banana	cytosol	64.51	64.73
KRH51046	Soybean	cytosol, peroxisome, plastid	68.26	62.7
OQU77380	Sorghum	mitochondrion	69.28	62.08
TraesCS1D01G084900.1	Wheat	mitochondrion, plastid	72.7	61.38
TraesCS1A01G083800.1	Wheat	plastid	72.7	61.38
TraesCS1B01G101100.1	Wheat	plastid	72.01	60.63
Os05t0140800-01	Rice	plastid	70.31	56.44
Zm00001d006796_P001	Maize	extracellular	66.21	54.19
HORVU1Hr1G018140.5	Barley	extracellular, mitochondrion	71.67	52.63
KRH24734	Soybean	extracellular, plasma membrane, vacuole	13.31	34.21
KRH00026	Soybean	cytosol, mitochondrion, peroxisome	27.65	30.68
KRH24732	Soybean	cytosol, endoplasmic reticulum, plastid	27.99	30.48
KRH24731	Soybean	nucleus	27.65	30.34
KRH49156	Soybean	plastid	17.06	29.24
KRH24733	Soybean	nucleus	25.94	28.68
KRH36525	Soybean	endoplasmic reticulum	24.91	28.63
KRH13054	Soybean	nucleus	28.33	27.85
KRH44885	Soybean	nucleus	28.33	27.85
KRH11511	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	24.23	27.84
KRH31007	Soybean	mitochondrion	25.26	27.31
KRH49151	Soybean	mitochondrion	24.57	27.17
KRH00030	Soybean	cytosol	24.57	27.07
KRH49153	Soybean	cytosol	23.89	26.32
KRH02005	Soybean	endoplasmic reticulum, nucleus	22.53	26.19
KRH00032	Soybean	cytosol, peroxisome, plastid	16.04	26.11
KRG97870	Soybean	mitochondrion	22.18	26.0
KRH31025	Soybean	plastid	24.57	25.99
KRG97856	Soybean	mitochondrion, plastid	23.55	25.37
KRH29741	Soybean	plastid	26.28	25.08
KRH31026	Soybean	cytosol, mitochondrion, peroxisome, plastid	23.21	25.0
KRH00029	Soybean	peroxisome	8.19	24.49
KRH49152	Soybean	cytosol	24.23	24.07
KRH70902	Soybean	cytosol	8.87	23.64
KRH31021	Soybean	mitochondrion	22.87	22.11
KRG97857	Soybean	mitochondrion	17.06	20.0
KRH29740	Soybean	cytosol	5.8	17.35

Protein Annotations

Gene3D:3.40.50.720	MapMan:35.1	UniProt:A0A0R4J681	EMBL:ACUP02012768	EnsemblPlantsGene:GLYMA_20G233000	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	EnsemblPlants:KRG92837
ProteinID:KRG92837	ProteinID:KRG92837.1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF13561	PRINTS:PR00080	PRINTS:PR00081
ScanProsite:PS00061	PANTHER:PTHR43348	PANTHER:PTHR43348:SF4	InterPro:SDR_fam	SUPFAM:SSF51735	InterPro:Sc_DH/Rdtase_CS
UniParc:UPI0001890B36	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:-:46610153..46611891

Molecular Weight (calculated)

31847.9 Da

IEP (calculated)

7.538

GRAVY (calculated)

-0.322

Length

293 amino acids

Sequence
(BLAST)

001: MASGEQKFPP QQQQTQPGKE HAMTPVPQFT SPDYKPSNKL QGKIALVTGG DSGIGRAVCN LFALEGATVA FTYVKGHEDK DARDTLEMIK RAKTSDAKDP
101: MAIPSDLGYD ENCKRVVDEV VSAYGRIDIL VNNAAEQYEC GTVEDIDEPR LERVFRTNIF SYFFMARHAL KHMKEGSSII NTTSVNAYKG HAKLLDYTST
201: KGAIVAYTRG LALQLVSKGI RVNGVAPGPI WTPLIPASFK EEETAQFGAQ VPMKRAGQPI EVAPSYVFLA SNQCSSYITG QVLHPNGGTV VNG

Best Arabidopsis Sequence Match ( AT1G54870.2 )
(BLAST)

001: MAMNVLCRVF TSSRVLSSNV TFSFSQIPNN TKKPLLEKRR LSPRVCLRAM ASEKQKQHAQ PGKEHVMESS PQFSSSDYQP SNKLRGKVAL ITGGDSGIGR
101: AVGYCFASEG ATVAFTYVKG QEEKDAQETL QMLKEVKTSD SKEPIAIPTD LGFDENCKRV VDEVVNAFGR IDVLINNAAE QYESSTIEEI DEPRLERVFR
201: TNIFSYFFLT RHALKHMKEG SSIINTTSVN AYKGNASLLD YTATKGAIVA FTRGLALQLA EKGIRVNGVA PGPIWTPLIP ASFNEEKIKN FGSEVPMKRA
301: GQPIEVAPSY VFLACNHCSS YFTGQVLHPN GGAVVNA

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:TAIR;Acc:AT1G54870]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.