CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
peroxisome 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, peroxisome, plastid
BaCelLo:	plastid
MultiLoc:	peroxisome
Plant-mPloc:	peroxisome
PProwler:	peroxisome
PTS1:	peroxisome
WoLF PSORT:	cytosol
YLoc:	peroxisome

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13054	Soybean	nucleus	95.64	95.64
VIT_19s0085g00500.t01	Wine grape	peroxisome	84.56	84.85
CDX73802	Canola	peroxisome	81.21	81.21
Bra034728.1-P	Field mustard	cytosol	79.53	80.61
CDY08402	Canola	cytosol	79.53	80.61
Solyc07g066630.2.1	Tomato	plastid	80.54	80.27
Bra001471.1-P	Field mustard	peroxisome	80.2	80.2
PGSC0003DMT400056868	Potato	cytosol, peroxisome, plastid	45.97	80.12
CDY00799	Canola	peroxisome	79.87	79.87
AT3G12800.1	Thale cress	peroxisome	78.52	78.52
VIT_01s0011g01520.t01	Wine grape	peroxisome	77.85	78.11
GSMUA_Achr2P01480_001	Banana	peroxisome	74.83	75.08
GSMUA_Achr3P23590_001	Banana	peroxisome	74.16	74.41
Zm00001d026290_P001	Maize	peroxisome	71.81	71.81
EES11416	Sorghum	mitochondrion, peroxisome, plastid	71.48	71.72
Os04t0614000-01	Rice	cytosol	70.13	69.9
EES11417	Sorghum	peroxisome	68.46	68.69
TraesCS2D01G418900.1	Wheat	peroxisome	68.46	68.23
TraesCS2B01G441000.1	Wheat	peroxisome	68.46	68.23
HORVU2Hr1G098920.1	Barley	peroxisome	68.12	67.89
TraesCS2A01G422500.1	Wheat	golgi, peroxisome	67.79	67.56
Zm00001d002332_P026	Maize	peroxisome	67.11	67.34
KRH00029	Soybean	peroxisome	9.73	29.59
KRH68615	Soybean	cytosol, nucleus, plastid	21.14	28.51
KRG92837	Soybean	endoplasmic reticulum, nucleus	27.85	28.33
KRH49156	Soybean	plastid	16.11	28.07
KRH02005	Soybean	endoplasmic reticulum, nucleus	23.49	27.78
KRH00026	Soybean	cytosol, mitochondrion, peroxisome	24.5	27.65
KRG96884	Soybean	cytosol	27.18	27.46
KRH33956	Soybean	endoplasmic reticulum	26.85	27.3
KRH11511	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	23.15	27.06
KRH36525	Soybean	endoplasmic reticulum	22.82	26.67
KRH68572	Soybean	cytosol	26.51	26.33
KRH49153	Soybean	cytosol	23.49	26.32
KRH24734	Soybean	extracellular, plasma membrane, vacuole	10.07	26.32
KRH68573	Soybean	cytosol	24.16	26.18
KRH24733	Soybean	nucleus	23.15	26.04
KRH00030	Soybean	cytosol	22.82	25.56
KRH24731	Soybean	nucleus	22.82	25.47
KRH70902	Soybean	cytosol	9.4	25.45
KRH24732	Soybean	cytosol, endoplasmic reticulum, plastid	22.82	25.28
KRH31007	Soybean	mitochondrion	22.82	25.09
KRG97856	Soybean	mitochondrion, plastid	22.15	24.26
KRH31025	Soybean	plastid	22.48	24.19
KRH49151	Soybean	mitochondrion	21.48	24.15
KRH51046	Soybean	cytosol, peroxisome, plastid	25.84	24.14
KRH00032	Soybean	cytosol, peroxisome, plastid	14.43	23.89
KRG97870	Soybean	mitochondrion	19.46	23.2
KRH31026	Soybean	cytosol, mitochondrion, peroxisome, plastid	21.14	23.16
KRH29741	Soybean	plastid	23.49	22.8
KRH49152	Soybean	cytosol	22.48	22.71
KRH31021	Soybean	mitochondrion	21.81	21.45
KRG97857	Soybean	mitochondrion	17.79	21.2
KRH29740	Soybean	cytosol	5.37	16.33

Protein Annotations

EMBL:ACUP02004974	EMBL:BT097741	EnsemblPlants:KRH44885	EnsemblPlantsGene:GLYMA_08G237400	EntrezGene:100800885	Gene3D:3.40.50.720
InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam	PANTHER:PTHR43296	PANTHER:PTHR43296:SF1	PFAM:PF13561	PRINTS:PR00080
PRINTS:PR00081	ProteinID:KRH44885	ProteinID:KRH44885.1	SEG:seg	SUPFAM:SSF51735	UniParc:UPI0001AE6156
UniProt:C6TJ97	MapMan:5.7.3.5.3	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:20166989..20172473

Molecular Weight (calculated)

31968.4 Da

IEP (calculated)

9.701

GRAVY (calculated)

-0.063

Length

298 amino acids

Sequence
(BLAST)

001: MESPFRPEIL KGKVALITGG ASGIGFEIST QFGKHGASVA LMGRRKQVLQ SAVSVLQSLA IPAVGFEGDV RKQEDAVRVV ESTFKHFGRI DILVNAAAGN
101: FLVSAEDLSP NGFRTVLDID SVGTFTMCHE ALKYLKKGGE GRSNSSSGGS IINISATLHY TASWYQIHVS AAKAAVDATT RNLALEWGTD YDIRVNGIAP
201: GPISDTPGMS KLAPDEISSK ARDYMPLYKL GEKWDIAMAA LFLVSDAGKF INGDIMIVDG GLWLSRPRHL AKEAVKQVSR SVENRSRNAS VSVPKSKL

Best Arabidopsis Sequence Match ( AT3G12800.1 )
(BLAST)

001: MDSPFKPDVV RGQVALITGG GSGIGFEISS QFGKHGASIA IMGRRKQVLD DAVSALRSLG IQAIGLEGDV RKQEDARRVV EATFQHFGKL DILVNAAAGN
101: FLAAAEDLSP NGFRTVLDID AVGTFNMCHA ALKYLKKGAP GRDSSSGGGS IINISATLHY TASWYQIHVS AAKAAVDATT RNLALEWGTD YDIRVNGIAP
201: GPIGGTPGMS KLVPEEIENK TREYMPLYKV GEKWDIAMAA LYLSCDSGKY VSGLTMVVDG GLWLSKPRHL PKEAVKQLSR AVEKRSRAKP VGLPTSKL

Arabidopsis Description

SDRBUncharacterized protein At3g12790 [Source:UniProtKB/TrEMBL;Acc:Q0WMN4]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.