CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10294
KRH23029
KRH24731
KRH24732
KRH24733
KRH24840
KRH29740
KRH29844

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06060.1	KRH24731	AT2G29330.1	21798944
AT5G06060.1	KRH24732	AT2G29330.1	21798944
AT5G06060.1	KRH24733	AT2G29330.1	21798944
AT5G06060.1	KRH29740	AT2G29330.1	21798944
AT5G06060.1	KRH24731	AT2G29360.1	21798944
AT5G06060.1	KRH24732	AT2G29360.1	21798944
AT5G06060.1	KRH24733	AT2G29360.1	21798944
AT5G06060.1	KRH29740	AT2G29360.1	21798944
AT5G06060.1	KRH10294	AT3G46090.1	17259181
AT5G06060.1	KRH23029	AT3G46090.1	17259181
AT5G06060.1	KRH24840	AT3G46090.1	17259181
AT5G06060.1	KRH29844	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97856	Soybean	mitochondrion, plastid	83.03	84.56
KRH31026	Soybean	cytosol, mitochondrion, peroxisome, plastid	76.17	77.57
KRH31021	Soybean	mitochondrion	83.03	75.91
KRG97857	Soybean	mitochondrion	68.23	75.6
KRH31007	Soybean	mitochondrion	68.23	69.74
VIT_13s0019g02180.t01	Wine grape	peroxisome, plasma membrane, plastid	67.15	69.4
AT5G06060.1	Thale cress	peroxisome	64.26	67.42
CDY04977	Canola	peroxisome	63.18	66.54
CDY14094	Canola	peroxisome	63.18	66.54
GSMUA_Achr10P...	Banana	cytosol	64.98	66.42
Bra028744.1-P	Field mustard	cytosol	61.73	65.02
CDX98899	Canola	peroxisome	61.37	64.89
KRG97870	Soybean	mitochondrion	58.48	64.8
HORVU4Hr1G060350.3	Barley	plastid	62.82	63.97
VIT_13s0019g02140.t01	Wine grape	peroxisome	62.09	63.47
TraesCS4A01G094400.1	Wheat	plastid	61.73	62.87
TraesCS4B01G210000.1	Wheat	plastid	61.73	62.87
Solyc03g096640.2.1	Tomato	mitochondrion, plastid	60.65	62.69
Bra009159.1-P	Field mustard	cytosol, mitochondrion, peroxisome, plasma membrane	59.21	62.6
CDX70101	Canola	peroxisome	59.21	62.6
TraesCS4D01G210800.1	Wheat	plastid	61.37	62.5
CDY04975	Canola	mitochondrion	25.27	62.5
PGSC0003DMT400043159	Potato	mitochondrion	60.65	62.45
VIT_13s0019g02130.t01	Wine grape	peroxisome	60.29	62.31
Os03t0268900-02	Rice	plastid	60.65	62.22
KRH24734	Soybean	extracellular, plasma membrane, vacuole	25.27	61.4
Zm00001d028575_P001	Maize	extracellular	59.93	60.81
TraesCS4B01G209900.1	Wheat	peroxisome	59.21	60.74
Os03t0269000-01	Rice	plastid	46.57	60.56
TraesCS4A01G094500.1	Wheat	cytosol, peroxisome, plastid	59.21	60.52
KRH24731	Soybean	nucleus	57.76	59.93
KRH24733	Soybean	nucleus	57.04	59.62
KRH24732	Soybean	cytosol, endoplasmic reticulum, plastid	55.6	57.25
KRH00026	Soybean	cytosol, mitochondrion, peroxisome	54.51	57.2
PGSC0003DMT400043152	Potato	peroxisome	56.68	56.68
KRH00030	Soybean	cytosol	54.15	56.39
VIT_13s0019g02170.t01	Wine grape	mitochondrion, nucleus, peroxisome, plastid	57.76	56.14
EES08074	Sorghum	plastid	60.29	55.48
Solyc03g096660.1.1	Tomato	extracellular	38.99	55.38
KRH29741	Soybean	plastid	61.01	55.05
KRH49151	Soybean	mitochondrion	51.62	53.96
Os03t0269100-02	Rice	mitochondrion, plastid	59.57	53.57
KRH49153	Soybean	cytosol	50.54	52.63
KRH00029	Soybean	peroxisome	18.41	52.04
OQU92858	Sorghum	cytosol, peroxisome, plastid	57.76	51.95
TraesCS4D01G210700.1	Wheat	plastid	59.21	51.73
KRH49156	Soybean	plastid	31.05	50.29
KRH29740	Soybean	cytosol	17.69	50.0
CDX98898	Canola	cytosol, peroxisome, plasma membrane	54.87	49.03
HORVU4Hr1G060330.1	Barley	mitochondrion	54.87	47.5
KRH49152	Soybean	cytosol	49.82	46.78
KRH00032	Soybean	cytosol, peroxisome, plastid	27.08	41.67
OQU91956	Sorghum	extracellular, peroxisome	46.57	40.31
KRH02005	Soybean	endoplasmic reticulum, nucleus	28.52	31.35
KRH36525	Soybean	endoplasmic reticulum	28.16	30.59
KRH11511	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	27.8	30.2
KRH70902	Soybean	cytosol	11.91	30.0
KRG92837	Soybean	endoplasmic reticulum, nucleus	25.99	24.57
KRH33956	Soybean	endoplasmic reticulum	25.99	24.57
KRG96884	Soybean	cytosol	25.99	24.41
KRH68572	Soybean	cytosol	26.35	24.33
KRH68615	Soybean	cytosol, nucleus, plastid	19.13	23.98
KRH68573	Soybean	cytosol	23.1	23.27
KRH44885	Soybean	nucleus	24.19	22.48
KRH13054	Soybean	nucleus	23.83	22.15
KRH51046	Soybean	cytosol, peroxisome, plastid	24.19	21.0

Protein Annotations

EntrezGene:100791265	Gene3D:3.40.50.720	MapMan:50.1.1	EMBL:ACUP02007119	EnsemblPlantsGene:GLYMA_11G222400	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	UniProt:K7LRL6
EnsemblPlants:KRH31025	ProteinID:KRH31025	ProteinID:KRH31025.1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF13561	PRINTS:PR00080
PRINTS:PR00081	ScanProsite:PS00061	PANTHER:PTHR42898	PANTHER:PTHR42898:SF3	InterPro:SDR_fam	SUPFAM:SSF51735
InterPro:Sc_DH/Rdtase_CS	UniParc:UPI000233CE1B	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr11:+:31747256..31753710

Molecular Weight (calculated)

29825.5 Da

IEP (calculated)

7.310

GRAVY (calculated)

-0.039

Length

277 amino acids

Sequence
(BLAST)

001: MVAESQQSSS SSINRGARWS LNGMTALVTG GTRGIGHAIV NDLAAFGAAV HTCSRNQTEL NKCLQEWQSQ GFEVTGSVCD VSSPPQREKL IQEAASTFNG
101: KLNIYVNNVG VNYRKPTIEY SAEEYSEMMT VNLNSAFHLC QLAYPLLKAS GKGSIVFLSS VAGVTSMGTG SVYAASKAAI NQLTKNLACE WAKDNIRSNC
201: VVPWTTRTPL IEHLLQNQTF VEDVMSRTPL KRIAEPEEVS SLVAFLCLPA ASYITGQVIC ADGGVTVNGF QPSMRIT

Best Arabidopsis Sequence Match ( AT5G06060.1 )
(BLAST)

001: METDKRWSLA GKTALVTGGT RGIGRAVVEE LAKFGAKVHT CSRNQEELNA CLNDWKANGL VVSGSVCDAS VRDQREKLIQ EASSAFSGKL NILINNVGTN
101: VRKPTVEYSS EEYAKIMSTN LESAFHLSQI AHPLLKASGV GSIVFISSVA GLVHLSSGSI YGATKGALNQ LTRNLACEWA SDNIRTNCVA PWYIKTSLVE
201: TLLEKKEFVE AVVSRTPLGR VGEPEEVSSL VAFLCLPASS YITGQVISVD GGFTVNGFSY AMKP

Arabidopsis Description

Tropinone reductase homolog At5g06060 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHT0]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.