Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- cytosol 2
- peroxisome 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY14094 | Canola | peroxisome | 90.53 | 90.87 |
| CDY04977 | Canola | peroxisome | 89.39 | 89.73 |
| Bra028744.1-P | Field mustard | cytosol | 88.64 | 88.97 |
| CDX98899 | Canola | peroxisome | 88.26 | 88.93 |
| CDX70101 | Canola | peroxisome | 82.95 | 83.59 |
| Bra009159.1-P | Field mustard | cytosol, mitochondrion, peroxisome, plasma membrane | 82.58 | 83.21 |
| CDY04975 | Canola | mitochondrion | 35.23 | 83.04 |
| Solyc03g096640.2.1 | Tomato | mitochondrion, plastid | 73.11 | 72.01 |
| PGSC0003DMT400043159 | Potato | mitochondrion | 72.35 | 71.0 |
| VIT_13s0019g02180.t01 | Wine grape | peroxisome, plasma membrane, plastid | 70.08 | 69.03 |
| GSMUA_Achr10P... | Banana | cytosol | 70.45 | 68.63 |
| HORVU4Hr1G060350.3 | Barley | plastid | 70.45 | 68.38 |
| TraesCS4A01G094400.1 | Wheat | plastid | 70.08 | 68.01 |
| TraesCS4B01G210000.1 | Wheat | plastid | 69.7 | 67.65 |
| TraesCS4D01G210800.1 | Wheat | plastid | 69.7 | 67.65 |
| TraesCS4A01G094500.1 | Wheat | cytosol, peroxisome, plastid | 69.32 | 67.53 |
| Os03t0268900-02 | Rice | plastid | 68.56 | 67.04 |
| TraesCS4B01G209900.1 | Wheat | peroxisome | 68.56 | 67.04 |
| CDX98898 | Canola | cytosol, peroxisome, plasma membrane | 78.03 | 66.45 |
| Zm00001d028575_P001 | Maize | extracellular | 68.18 | 65.93 |
| KRH31007 | Soybean | mitochondrion | 67.42 | 65.68 |
| AT1G07440.1 | Thale cress | mitochondrion | 64.77 | 64.29 |
| KRH31025 | Soybean | plastid | 67.42 | 64.26 |
| AT2G29350.1 | Thale cress | plastid | 65.15 | 63.94 |
| AT2G29290.2 | Thale cress | plastid | 63.26 | 63.74 |
| AT1G07450.1 | Thale cress | cytosol, nucleus, peroxisome | 62.5 | 63.46 |
| AT2G29330.1 | Thale cress | cytosol, peroxisome, plastid | 62.5 | 63.46 |
| KRH31026 | Soybean | cytosol, mitochondrion, peroxisome, plastid | 65.15 | 63.24 |
| KRG97856 | Soybean | mitochondrion, plastid | 65.15 | 63.24 |
| VIT_13s0019g02130.t01 | Wine grape | peroxisome | 64.02 | 63.06 |
| Os03t0269000-01 | Rice | plastid | 50.76 | 62.91 |
| PGSC0003DMT400043152 | Potato | peroxisome | 65.91 | 62.82 |
| VIT_13s0019g02140.t01 | Wine grape | peroxisome | 64.39 | 62.73 |
| AT2G29360.1 | Thale cress | cytosol | 64.39 | 62.73 |
| Solyc03g096660.1.1 | Tomato | extracellular | 46.21 | 62.56 |
| AT2G29150.1 | Thale cress | peroxisome | 63.26 | 62.31 |
| AT2G29370.1 | Thale cress | peroxisome | 63.26 | 62.31 |
| AT2G29310.1 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 60.23 | 60.69 |
| KRG97870 | Soybean | mitochondrion | 56.82 | 60.0 |
| AT2G29320.1 | Thale cress | mitochondrion | 60.98 | 59.85 |
| KRG97857 | Soybean | mitochondrion | 55.3 | 58.4 |
| AT2G30670.1 | Thale cress | cytosol, nucleus, peroxisome | 57.95 | 58.4 |
| TraesCS4D01G210700.1 | Wheat | plastid | 70.08 | 58.36 |
| OQU92858 | Sorghum | cytosol, peroxisome, plastid | 67.42 | 57.79 |
| VIT_13s0019g02170.t01 | Wine grape | mitochondrion, nucleus, peroxisome, plastid | 60.61 | 56.14 |
| Os03t0269100-02 | Rice | mitochondrion, plastid | 65.15 | 55.84 |
| EES08074 | Sorghum | plastid | 63.26 | 55.48 |
| KRH31021 | Soybean | mitochondrion | 63.64 | 55.45 |
| AT2G29170.1 | Thale cress | cytosol | 22.35 | 55.14 |
| HORVU4Hr1G060330.1 | Barley | mitochondrion | 65.53 | 54.06 |
| AT2G29300.2 | Thale cress | extracellular | 57.2 | 52.8 |
| AT2G29260.1 | Thale cress | plastid | 64.02 | 52.48 |
| AT2G29340.1 | Thale cress | cytosol, endoplasmic reticulum, peroxisome | 59.47 | 51.14 |
| OQU91956 | Sorghum | extracellular, peroxisome | 51.89 | 42.81 |
| AT4G05530.1 | Thale cress | peroxisome | 31.44 | 32.68 |
| AT3G05260.1 | Thale cress | cytosol | 28.79 | 26.3 |
| AT2G07640.1 | Thale cress | mitochondrion | 14.77 | 25.0 |
| AT3G12800.1 | Thale cress | peroxisome | 26.89 | 23.83 |
| AT1G54870.2 | Thale cress | plastid | 30.3 | 23.74 |
| AT1G36580.1 | Thale cress | nucleus | 17.05 | 23.08 |
Protein Annotations
| Gene3D:3.40.50.720 | MapMan:50.1.1 | EntrezGene:830493 | UniProt:A0A178UEY6 | ProteinID:AED90960.1 | ArrayExpress:AT5G06060 |
| EnsemblPlantsGene:AT5G06060 | RefSeq:AT5G06060 | TAIR:AT5G06060 | RefSeq:AT5G06060-TAIR-G | EnsemblPlants:AT5G06060.1 | TAIR:AT5G06060.1 |
| EMBL:AY084550 | ProteinID:BAA98195.1 | EMBL:BT002894 | EMBL:BT004454 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016491 | GO:GO:0055114 | InterPro:NAD(P)-bd_dom_sf | RefSeq:NP_196225.1 | ProteinID:OAO92255.1 |
| PFAM:PF13561 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001017 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00080 | PRINTS:PR00081 | ScanProsite:PS00061 | PANTHER:PTHR42898 |
| PANTHER:PTHR42898:SF3 | UniProt:Q9LHT0 | InterPro:SDR_fam | SUPFAM:SSF51735 | InterPro:Sc_DH/Rdtase_CS | UniParc:UPI000000BE22 |
| SEG:seg | : | : | : | : | : |
Description
Tropinone reductase homolog At5g06060 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHT0]
Coordinates
chr5:-:1823839..1825926
Molecular Weight (calculated)
28293.8 Da
IEP (calculated)
7.806
GRAVY (calculated)
0.019
Length
264 amino acids
Sequence
(BLAST)
(BLAST)
001: METDKRWSLA GKTALVTGGT RGIGRAVVEE LAKFGAKVHT CSRNQEELNA CLNDWKANGL VVSGSVCDAS VRDQREKLIQ EASSAFSGKL NILINNVGTN
101: VRKPTVEYSS EEYAKIMSTN LESAFHLSQI AHPLLKASGV GSIVFISSVA GLVHLSSGSI YGATKGALNQ LTRNLACEWA SDNIRTNCVA PWYIKTSLVE
201: TLLEKKEFVE AVVSRTPLGR VGEPEEVSSL VAFLCLPASS YITGQVISVD GGFTVNGFSY AMKP
101: VRKPTVEYSS EEYAKIMSTN LESAFHLSQI AHPLLKASGV GSIVFISSVA GLVHLSSGSI YGATKGALNQ LTRNLACEWA SDNIRTNCVA PWYIKTSLVE
201: TLLEKKEFVE AVVSRTPLGR VGEPEEVSSL VAFLCLPASS YITGQVISVD GGFTVNGFSY AMKP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.