Factsheet for PGSC0003DMT400043159

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
cytosol 1
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400040141
PGSC0003DMT400040142
PGSC0003DMT400040143
PGSC0003DMT400040144
PGSC0003DMT400040206
PGSC0003DMT400040207
PGSC0003DMT400077934

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06060.1	PGSC0003DMT400040141	AT3G46090.1	17259181
AT5G06060.1	PGSC0003DMT400040142	AT3G46090.1	17259181
AT5G06060.1	PGSC0003DMT400040143	AT3G46090.1	17259181
AT5G06060.1	PGSC0003DMT400040144	AT3G46090.1	17259181
AT5G06060.1	PGSC0003DMT400040206	AT3G46090.1	17259181
AT5G06060.1	PGSC0003DMT400040207	AT3G46090.1	17259181
AT5G06060.1	PGSC0003DMT400077934	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g096640.2.1	Tomato	mitochondrion, plastid	95.54	95.9
PGSC0003DMT400043152	Potato	peroxisome	76.21	74.01
AT5G06060.1	Thale cress	peroxisome	71.0	72.35
CDX98899	Canola	peroxisome	69.89	71.76
VIT_13s0019g02180.t01	Wine grape	peroxisome, plasma membrane, plastid	71.38	71.64
GSMUA_Achr10P...	Banana	cytosol	71.75	71.22
CDY04977	Canola	peroxisome	68.77	70.34
CDY14094	Canola	peroxisome	68.77	70.34
Bra028744.1-P	Field mustard	cytosol	68.03	69.58
CDX70101	Canola	peroxisome	67.29	69.08
CDY04975	Canola	mitochondrion	28.62	68.75
Bra009159.1-P	Field mustard	cytosol, mitochondrion, peroxisome, plasma membrane	66.91	68.7
HORVU4Hr1G060350.3	Barley	plastid	68.03	67.28
TraesCS4B01G209900.1	Wheat	peroxisome	67.29	67.04
TraesCS4B01G210000.1	Wheat	plastid	67.66	66.91
KRH31007	Soybean	mitochondrion	67.29	66.79
Os03t0268900-02	Rice	plastid	66.91	66.67
TraesCS4A01G094400.1	Wheat	plastid	67.29	66.54
TraesCS4D01G210800.1	Wheat	plastid	66.91	66.18
TraesCS4A01G094500.1	Wheat	cytosol, peroxisome, plastid	66.54	66.05
Zm00001d028575_P001	Maize	extracellular	66.17	65.2
VIT_13s0019g02130.t01	Wine grape	peroxisome	63.94	64.18
Os03t0269000-01	Rice	plastid	49.81	62.91
VIT_13s0019g02140.t01	Wine grape	peroxisome	63.2	62.73
KRG97856	Soybean	mitochondrion, plastid	63.2	62.5
KRH31026	Soybean	cytosol, mitochondrion, peroxisome, plastid	62.83	62.13
KRG97870	Soybean	mitochondrion	56.88	61.2
VIT_13s0019g02170.t01	Wine grape	mitochondrion, nucleus, peroxisome, plastid	64.31	60.7
KRH31025	Soybean	plastid	62.45	60.65
Os03t0269100-02	Rice	mitochondrion, plastid	65.8	57.47
TraesCS4D01G210700.1	Wheat	plastid	67.66	57.41
EES08074	Sorghum	plastid	63.94	57.14
PGSC0003DMT400022974	Potato	peroxisome	57.25	57.04
PGSC0003DMT400015320	Potato	peroxisome	55.02	56.7
OQU92858	Sorghum	cytosol, peroxisome, plastid	64.31	56.17
KRG97857	Soybean	mitochondrion	52.04	56.0
PGSC0003DMT400072533	Potato	peroxisome	54.28	55.3
PGSC0003DMT400053141	Potato	mitochondrion, peroxisome, plastid	53.9	55.13
CDX98898	Canola	cytosol, peroxisome, plasma membrane	61.71	53.55
PGSC0003DMT400049413	Potato	endoplasmic reticulum, peroxisome, plastid	55.39	53.41
KRH31021	Soybean	mitochondrion	59.85	53.14
HORVU4Hr1G060330.1	Barley	mitochondrion	62.83	52.81
OQU91956	Sorghum	extracellular, peroxisome	51.3	43.12
PGSC0003DMT400022973	Potato	peroxisome	57.99	41.94
PGSC0003DMT400034518	Potato	peroxisome	29.37	31.1
PGSC0003DMT400073652	Potato	cytosol, peroxisome, plastid	30.11	27.65
PGSC0003DMT400056868	Potato	cytosol, peroxisome, plastid	16.36	25.73

Protein Annotations

EntrezGene:102599674	Gene3D:3.40.50.720	MapMan:50.1.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	UniProt:M1BE70	InterPro:NAD(P)-bd_dom_sf	PFAM:PF13561
EnsemblPlantsGene:PGSC0003DMG400016746	PGSC:PGSC0003DMG400016746	EnsemblPlants:PGSC0003DMT400043159	PRINTS:PR00080	PRINTS:PR00081	ScanProsite:PS00061
PANTHER:PTHR42898	PANTHER:PTHR42898:SF3	InterPro:SDR_fam	SUPFAM:SSF51735	InterPro:Sc_DH/Rdtase_CS	UniParc:UPI0002951ADC
RefSeq:XP_006344583.1	SEG:seg	:	:	:	:

Description

Short chain alcohol dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400016746]

Coordinates

chr3:-:33947580..33950763

Molecular Weight (calculated)

28763.1 Da

IEP (calculated)

7.458

GRAVY (calculated)

-0.056

Length

269 amino acids

Sequence
(BLAST)

001: MAKAAGSGSS SRWSLSGFTA LVTGGTRGIG HAVVEELAEL GATVYTCSRN EAQLNERLQE WAVKGLQVKG SVCDASSREQ RVQLMENVSA AFDGKLNILI
101: NNVGTNVRKP TTDYTAEEYA RLFSTNLESA YHLCQLAHPL LKASGNGSVV FISSVGGQVH LSTGSIYGAT KGAINQLTRN LACEWAKDNI RVNGVAPWYI
201: KTSLVEHLLE NKTFLDGVIS RTPLRRPGES QEVSSLVAYL CLPGASYITG QVIAVDGGFT VNGFETPSF

Best Arabidopsis Sequence Match ( AT5G06060.1 )
(BLAST)

001: METDKRWSLA GKTALVTGGT RGIGRAVVEE LAKFGAKVHT CSRNQEELNA CLNDWKANGL VVSGSVCDAS VRDQREKLIQ EASSAFSGKL NILINNVGTN
101: VRKPTVEYSS EEYAKIMSTN LESAFHLSQI AHPLLKASGV GSIVFISSVA GLVHLSSGSI YGATKGALNQ LTRNLACEWA SDNIRTNCVA PWYIKTSLVE
201: TLLEKKEFVE AVVSRTPLGR VGEPEEVSSL VAFLCLPASS YITGQVISVD GGFTVNGFSY AMKP

Arabidopsis Description

Tropinone reductase homolog At5g06060 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHT0]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.