Factsheet for PGSC0003DMT400056868

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

plastid 2
extracellular 1
mitochondrion 1
peroxisome 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g08740.t01	Wine grape	cytosol	52.63	73.17
Solyc07g066630.2.1	Tomato	plastid	98.83	56.52
KRH13054	Soybean	nucleus	80.12	45.97
KRH44885	Soybean	nucleus	80.12	45.97
Bra001471.1-P	Field mustard	peroxisome	78.95	45.3
CDX73802	Canola	peroxisome	78.36	44.97
CDY00799	Canola	peroxisome	78.36	44.97
AT3G12800.1	Thale cress	peroxisome	77.78	44.63
Bra034728.1-P	Field mustard	cytosol	76.61	44.56
CDY08402	Canola	cytosol	76.61	44.56
GSMUA_Achr3P23590_001	Banana	peroxisome	76.02	43.77
GSMUA_Achr2P01480_001	Banana	peroxisome	75.44	43.43
Zm00001d026290_P001	Maize	peroxisome	75.44	43.29
Os04t0614000-01	Rice	cytosol	75.44	43.14
EES11416	Sorghum	mitochondrion, peroxisome, plastid	74.85	43.1
EES11417	Sorghum	peroxisome	73.68	42.42
Zm00001d002332_P026	Maize	peroxisome	73.1	42.09
TraesCS2D01G418900.1	Wheat	peroxisome	73.1	41.81
TraesCS2B01G441000.1	Wheat	peroxisome	73.1	41.81
TraesCS2A01G422500.1	Wheat	golgi, peroxisome	73.1	41.81
HORVU2Hr1G098920.1	Barley	peroxisome	72.51	41.47
PGSC0003DMT400043159	Potato	mitochondrion	25.73	16.36
PGSC0003DMT400053141	Potato	mitochondrion, peroxisome, plastid	24.56	15.97
PGSC0003DMT400043152	Potato	peroxisome	24.56	15.16
PGSC0003DMT400015320	Potato	peroxisome	22.81	14.94
PGSC0003DMT400022974	Potato	peroxisome	23.39	14.81
PGSC0003DMT400034518	Potato	peroxisome	20.47	13.78
PGSC0003DMT400073652	Potato	cytosol, peroxisome, plastid	23.39	13.65
PGSC0003DMT400072533	Potato	peroxisome	19.88	12.88
PGSC0003DMT400049413	Potato	endoplasmic reticulum, peroxisome, plastid	19.3	11.83
PGSC0003DMT400022973	Potato	peroxisome	22.22	10.22

Protein Annotations

EnsemblPlants:PGSC0003DMT400056868	EnsemblPlantsGene:PGSC0003DMG402022117	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam	PANTHER:PTHR43296
PANTHER:PTHR43296:SF1	PFAM:PF13561	PGSC:PGSC0003DMG402022117	PRINTS:PR00081	SEG:seg	SUPFAM:SSF51735
UniParc:UPI0002969BFD	UniProt:M1C002	MapMan:35.1	:	:	:

Description

2,4-dienoyl-CoA reductase [Source:PGSC_GENE;Acc:PGSC0003DMG402022117]

Coordinates

chr7:-:56639620..56644040

Molecular Weight (calculated)

18512.4 Da

IEP (calculated)

9.775

GRAVY (calculated)

-0.260

Length

171 amino acids

Sequence
(BLAST)

001: MCHEALNYIK KGGPGRSLTS GGMILNISAT LHYTASWYQI HVAAAKAAVD AVTRNLALEW GTDYDIRVNG IAPGPIGDTA GMRKLGPEEI SNKSKEYMPL
101: YKLGEKYDIA MAALYLASDA GKYINGTIMP VDGGLWLSRP RHLPKDAVKE LSRTVEKKSR NAPVGVPPSK L

Best Arabidopsis Sequence Match ( AT3G12800.1 )
(BLAST)

001: MDSPFKPDVV RGQVALITGG GSGIGFEISS QFGKHGASIA IMGRRKQVLD DAVSALRSLG IQAIGLEGDV RKQEDARRVV EATFQHFGKL DILVNAAAGN
101: FLAAAEDLSP NGFRTVLDID AVGTFNMCHA ALKYLKKGAP GRDSSSGGGS IINISATLHY TASWYQIHVS AAKAAVDATT RNLALEWGTD YDIRVNGIAP
201: GPIGGTPGMS KLVPEEIENK TREYMPLYKV GEKWDIAMAA LYLSCDSGKY VSGLTMVVDG GLWLSKPRHL PKEAVKQLSR AVEKRSRAKP VGLPTSKL

Arabidopsis Description

SDRBUncharacterized protein At3g12790 [Source:UniProtKB/TrEMBL;Acc:Q0WMN4]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.