Factsheet for PGSC0003DMT400022974

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
peroxisome 2
plastid 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g011140.2.1	Tomato	cytosol	92.96	92.96
VIT_08s0007g00900.t01	Wine grape	mitochondrion, plastid	63.33	65.27
VIT_08s0007g00920.t01	Wine grape	peroxisome	62.22	62.92
PGSC0003DMT400072533	Potato	peroxisome	61.48	62.88
KRH00026	Soybean	cytosol, mitochondrion, peroxisome	59.63	60.98
PGSC0003DMT400015320	Potato	peroxisome	58.52	60.54
PGSC0003DMT400053141	Potato	mitochondrion, peroxisome, plastid	58.52	60.08
KRH00029	Soybean	peroxisome	21.48	59.18
PGSC0003DMT400043159	Potato	mitochondrion	57.04	57.25
PGSC0003DMT400043152	Potato	peroxisome	57.78	56.32
KRH49151	Soybean	mitochondrion	54.81	55.85
KRH00030	Soybean	cytosol	54.44	55.26
KRH49153	Soybean	cytosol	54.07	54.89
KRH49156	Soybean	plastid	34.07	53.8
PGSC0003DMT400049413	Potato	endoplasmic reticulum, peroxisome, plastid	52.59	50.9
PGSC0003DMT400022973	Potato	peroxisome	70.0	50.81
KRH49152	Soybean	cytosol	53.33	48.81
KRH00032	Soybean	cytosol, peroxisome, plastid	29.26	43.89
PGSC0003DMT400034518	Potato	peroxisome	27.78	29.53
PGSC0003DMT400073652	Potato	cytosol, peroxisome, plastid	29.63	27.3
PGSC0003DMT400056868	Potato	cytosol, peroxisome, plastid	14.81	23.39

Protein Annotations

EntrezGene:102596831	Gene3D:3.40.50.720	MapMan:50.1.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	UniProt:M1AHJ1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF13561
EnsemblPlantsGene:PGSC0003DMG402008895	PGSC:PGSC0003DMG402008895	EnsemblPlants:PGSC0003DMT400022974	PRINTS:PR00080	PRINTS:PR00081	ScanProsite:PS00061
PANTHER:PTHR42898	PANTHER:PTHR42898:SF15	InterPro:SDR_fam	SUPFAM:SSF51735	InterPro:Sc_DH/Rdtase_CS	UniParc:UPI000295BEBA
RefSeq:XP_006341006.1	SEG:seg	:	:	:	:

Description

Tropinone reductase 1 [Source:PGSC_GENE;Acc:PGSC0003DMG402008895]

Coordinates

chr9:-:1440915..1443446

Molecular Weight (calculated)

29558.8 Da

IEP (calculated)

7.700

GRAVY (calculated)

-0.031

Length

270 amino acids

Sequence
(BLAST)

001: MAEKNESNNS EDGRWTLQGK TALVTGGTKG IGHAIVEELA GFGAIVYTCC RNQEQLDQCL ERWRGKGYKV EGCVCDLTLR PQREMLMEKV INFFQGKLNI
101: LINNAGILIV KAATEFTEDD YSLIMKTNFE ASHHISQIAH PILKASENGN IVFISSVAGL VALPISSIYA ATKGAMNQLT RNLAYEWAKD NIRVNAVAPW
201: IINTPLIEAA KKNPLTKERM EKSISRTPIC RAGEPKEVSA MVAFLCFPAA SYITGQVICV DGGLTINGSF

Best Arabidopsis Sequence Match ( AT1G07440.1 )
(BLAST)

001: MAGAEQSQRW SLKAKTVLVT GGTKGIGHAI VEEFAGFGAV IHTCARNEYE LNECLSKWQK KGFQVTGSVC DASLRPEREK LMQTVSSMFG GKLDILINNL
101: GAIRSKPTLD YTAEDFSFHI STNLESAYHL SQLAHPLLKA SGCGNIIFMS SIAGVVSASV GSIYSATKGA LNQLARNLAC EWASDGIRAN AVAPAVIATP
201: LAEAVYDDEF KKVVISRKPL GRFGEPEEVS SLVAFLCMPA ASYITGQTIC VDGGLTVNGF SYQPQG

Arabidopsis Description

Tropinone reductase homolog At1g07440 [Source:UniProtKB/Swiss-Prot;Acc:P0DKI3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.