Factsheet for PGSC0003DMT400022973

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
peroxisome 2
plastid 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g011130.1.1	Tomato	plastid	62.9	88.97
PGSC0003DMT400022974	Potato	peroxisome	50.81	70.0
VIT_08s0007g00900.t01	Wine grape	mitochondrion, plastid	47.04	66.79
VIT_08s0007g00920.t01	Wine grape	peroxisome	45.16	62.92
PGSC0003DMT400072533	Potato	peroxisome	43.82	61.74
PGSC0003DMT400053141	Potato	mitochondrion, peroxisome, plastid	42.74	60.46
PGSC0003DMT400015320	Potato	peroxisome	41.67	59.39
KRH00029	Soybean	peroxisome	15.32	58.16
PGSC0003DMT400043159	Potato	mitochondrion	41.94	57.99
KRH00026	Soybean	cytosol, mitochondrion, peroxisome	41.13	57.95
PGSC0003DMT400043152	Potato	peroxisome	41.13	55.23
KRH49153	Soybean	cytosol	39.25	54.89
KRH49156	Soybean	plastid	25.0	54.39
KRH00030	Soybean	cytosol	38.71	54.14
KRH49151	Soybean	mitochondrion	38.44	53.96
PGSC0003DMT400049413	Potato	endoplasmic reticulum, peroxisome, plastid	37.63	50.18
KRH49152	Soybean	cytosol	36.56	46.1
KRH00032	Soybean	cytosol, peroxisome, plastid	21.77	45.0
PGSC0003DMT400034518	Potato	peroxisome	21.24	31.1
PGSC0003DMT400073652	Potato	cytosol, peroxisome, plastid	21.24	26.96
PGSC0003DMT400056868	Potato	cytosol, peroxisome, plastid	10.22	22.22

Protein Annotations

Gene3D:3.40.50.720	MapMan:50.1.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0055114	UniProt:M1AHJ0	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106	PFAM:PF13561
EnsemblPlantsGene:PGSC0003DMG401008895	PGSC:PGSC0003DMG401008895	EnsemblPlants:PGSC0003DMT400022973	PIRSF:PIRSF000126	PRINTS:PR00080	PRINTS:PR00081
ScanProsite:PS00061	PANTHER:PTHR42898	PANTHER:PTHR42898:SF15	InterPro:SDR_fam	SUPFAM:SSF51735	InterPro:Sc_DH/Rdtase_CS
UniParc:UPI0002949783	SEG:seg	:	:	:	:

Description

Short chain alcohol dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG401008895]

Coordinates

chr9:-:1444489..1453938

Molecular Weight (calculated)

40361.5 Da

IEP (calculated)

8.448

GRAVY (calculated)

0.078

Length

372 amino acids

Sequence
(BLAST)

001: MDADGRWTLQ GNTAIVTGGT RGIGYAIVEE LASFGANVYT CSRNQMELDE CLRKWKAKGF KVGGSMCDLL SRTQRQKFMD NVSSYFDGKI NILINNAAVI
101: VSNLATESTH EDYNTMMGTN FEASYHLSQL AHPFLKASKN GRIVFISSVA GFVSLPFCSI YSAAKGAMNQ LTRSLACEWA MDNIRVNAVA PWVIKTSLIE
201: AASINNVGIQ IGKPATEYTE EVYSIIMKTN FEASYHISQI AHPILKASGS GSIVFISSVV GFVALPANSI YSATKGAINQ LTRNLAYEWA KDNIRVNAVA
301: PWIIKTSLTE ALKQNPLVKE LMEKNISRTP ISRAGEPKEV SAMVAFLCFP AASYITGQVI CVDGGLTING SS

Best Arabidopsis Sequence Match ( AT1G07440.1 )
(BLAST)

001: MAGAEQSQRW SLKAKTVLVT GGTKGIGHAI VEEFAGFGAV IHTCARNEYE LNECLSKWQK KGFQVTGSVC DASLRPEREK LMQTVSSMFG GKLDILINNL
101: GAIRSKPTLD YTAEDFSFHI STNLESAYHL SQLAHPLLKA SGCGNIIFMS SIAGVVSASV GSIYSATKGA LNQLARNLAC EWASDGIRAN AVAPAVIATP
201: LAEAVYDDEF KKVVISRKPL GRFGEPEEVS SLVAFLCMPA ASYITGQTIC VDGGLTVNGF SYQPQG

Arabidopsis Description

Tropinone reductase homolog At1g07440 [Source:UniProtKB/Swiss-Prot;Acc:P0DKI3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.