Factsheet for PGSC0003DMT400053141

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, plastid

Predictor Summary:

cytosol 2
mitochondrion 3
plastid 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g054950.2.1	Tomato	mitochondrion, peroxisome, plastid	98.1	98.1
VIT_08s0007g00900.t01	Wine grape	mitochondrion, plastid	59.32	59.54
KRH00029	Soybean	peroxisome	22.05	59.18
PGSC0003DMT400022974	Potato	peroxisome	60.08	58.52
VIT_08s0007g00920.t01	Wine grape	peroxisome	58.94	58.05
KRH00026	Soybean	cytosol, mitochondrion, peroxisome	56.27	56.06
PGSC0003DMT400072533	Potato	peroxisome	55.13	54.92
PGSC0003DMT400015320	Potato	peroxisome	54.37	54.79
KRH00030	Soybean	cytosol	54.75	54.14
KRH49151	Soybean	mitochondrion	54.37	53.96
PGSC0003DMT400043159	Potato	mitochondrion	55.13	53.9
PGSC0003DMT400049413	Potato	endoplasmic reticulum, peroxisome, plastid	57.03	53.76
KRH49153	Soybean	cytosol	52.47	51.88
PGSC0003DMT400043152	Potato	peroxisome	53.23	50.54
KRH49156	Soybean	plastid	32.7	50.29
KRH49152	Soybean	cytosol	53.61	47.8
PGSC0003DMT400022973	Potato	peroxisome	60.46	42.74
KRH00032	Soybean	cytosol, peroxisome, plastid	27.76	40.56
PGSC0003DMT400034518	Potato	peroxisome	31.94	33.07
PGSC0003DMT400073652	Potato	cytosol, peroxisome, plastid	30.42	27.3
PGSC0003DMT400056868	Potato	cytosol, peroxisome, plastid	15.97	24.56

Protein Annotations

EntrezGene:102590679	Gene3D:3.40.50.720	MapMan:50.1.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0055114
UniProt:M1BUG6	InterPro:NAD(P)-bd_dom_sf	PFAM:PF13561	EnsemblPlantsGene:PGSC0003DMG400020618	PGSC:PGSC0003DMG400020618	EnsemblPlants:PGSC0003DMT400053141
PRINTS:PR00080	PRINTS:PR00081	ScanProsite:PS00061	PANTHER:PTHR42898	PANTHER:PTHR42898:SF15	InterPro:SDR_fam
SUPFAM:SSF51735	InterPro:Sc_DH/Rdtase_CS	TMHMM:TMhelix	UniParc:UPI0002948CEB	RefSeq:XP_006355361.1	:

Description

Tropinone reductase homolog [Source:PGSC_GENE;Acc:PGSC0003DMG400020618]

Coordinates

chr4:+:51406919..51410555

Molecular Weight (calculated)

28411.2 Da

IEP (calculated)

5.367

GRAVY (calculated)

0.068

Length

263 amino acids

Sequence
(BLAST)

001: MAQIGDGRWS LHGMTALVTG GTRGIGYAIV EELASFGASI YTCSRNKKDL DECLEKWQTK GYKVNGSTCD LFLEDQRIEL IDKATQHFNG KLDILVNNAA
101: ICVPKETAQI TSADCSLMMG TNFEASYNLC QLAYPYLKGS GKASIVFISS ISGIMAIPFV SLYAATKGAI NQLTKNLACE WGKDNIRVNA VAPWIIDTAL
201: TDTVAEDFES SDVEKLIKRT PISRMGKPNE VSSLVAYLCF PAAAYITGQI ICVDGGKTVS GFP

Best Arabidopsis Sequence Match ( AT2G29350.1 )
(BLAST)

001: MAKEGGLGEN SRWSLGGMTA LVTGGSKGIG EAVVEELAML GAKVHTCARD ETQLQERLRE WQAKGFQVTT SVCDVSSRDQ RVKLMETVSS LYQGKLNILV
101: NNVGTSIFKP TTEYTAEDFS FVMATNLESA FHLSQLAHPL LKASGSGSIV LISSAAGVVH VNVGSIYGAT KGAMNQLARN LACEWASDNI RTNSVCPWYI
201: TTPLSNDFFD EEFKKEAVRT TPMGRVGEAN EVSPLVAFLC LPSASYITGQ TICVDGGATV NGFSFKTMP

Arabidopsis Description

SAG13SAG13 [Source:UniProtKB/TrEMBL;Acc:A0A178VTS8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.