Factsheet for PGSC0003DMT400043152

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
peroxisome 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400040141
PGSC0003DMT400040142
PGSC0003DMT400040143
PGSC0003DMT400040144
PGSC0003DMT400040206
PGSC0003DMT400040207
PGSC0003DMT400077934

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06060.1	PGSC0003DMT400040141	AT3G46090.1	17259181
AT5G06060.1	PGSC0003DMT400040142	AT3G46090.1	17259181
AT5G06060.1	PGSC0003DMT400040143	AT3G46090.1	17259181
AT5G06060.1	PGSC0003DMT400040144	AT3G46090.1	17259181
AT5G06060.1	PGSC0003DMT400040206	AT3G46090.1	17259181
AT5G06060.1	PGSC0003DMT400040207	AT3G46090.1	17259181
AT5G06060.1	PGSC0003DMT400077934	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g096660.1.1	Tomato	extracellular	61.37	87.18
PGSC0003DMT400043159	Potato	mitochondrion	74.01	76.21
CDX98899	Canola	peroxisome	62.45	66.03
AT5G06060.1	Thale cress	peroxisome	62.82	65.91
CDY04977	Canola	peroxisome	62.45	65.78
CDY14094	Canola	peroxisome	62.45	65.78
VIT_13s0019g02180.t01	Wine grape	peroxisome, plasma membrane, plastid	63.18	65.3
Bra028744.1-P	Field mustard	cytosol	61.37	64.64
CDY04975	Canola	mitochondrion	25.99	64.29
GSMUA_Achr10P...	Banana	cytosol	62.45	63.84
CDX70101	Canola	peroxisome	60.29	63.74
Bra009159.1-P	Field mustard	cytosol, mitochondrion, peroxisome, plasma membrane	59.93	63.36
KRH31007	Soybean	mitochondrion	61.37	62.73
VIT_13s0019g02140.t01	Wine grape	peroxisome	58.12	59.41
TraesCS4A01G094500.1	Wheat	cytosol, peroxisome, plastid	58.12	59.41
Os03t0268900-02	Rice	plastid	57.76	59.26
TraesCS4B01G209900.1	Wheat	peroxisome	57.76	59.26
KRG97856	Soybean	mitochondrion, plastid	58.12	59.19
HORVU4Hr1G060350.3	Barley	plastid	57.4	58.46
VIT_13s0019g02130.t01	Wine grape	peroxisome	56.32	58.21
KRH31026	Soybean	cytosol, mitochondrion, peroxisome, plastid	57.04	58.09
PGSC0003DMT400022974	Potato	peroxisome	56.32	57.78
TraesCS4B01G210000.1	Wheat	plastid	56.68	57.72
TraesCS4A01G094400.1	Wheat	plastid	56.68	57.72
TraesCS4D01G210800.1	Wheat	plastid	56.32	57.35
Zm00001d028575_P001	Maize	extracellular	56.32	57.14
KRH31025	Soybean	plastid	56.68	56.68
KRG97870	Soybean	mitochondrion	50.9	56.4
Os03t0269000-01	Rice	plastid	42.96	55.87
PGSC0003DMT400015320	Potato	peroxisome	50.9	54.02
KRG97857	Soybean	mitochondrion	48.74	54.0
VIT_13s0019g02170.t01	Wine grape	mitochondrion, nucleus, peroxisome, plastid	54.87	53.33
PGSC0003DMT400053141	Potato	mitochondrion, peroxisome, plastid	50.54	53.23
KRH31021	Soybean	mitochondrion	57.04	52.15
PGSC0003DMT400072533	Potato	peroxisome	49.46	51.89
TraesCS4D01G210700.1	Wheat	plastid	58.12	50.79
CDX98898	Canola	cytosol, peroxisome, plasma membrane	55.96	50.0
Os03t0269100-02	Rice	mitochondrion, plastid	55.6	50.0
EES08074	Sorghum	plastid	54.15	49.83
PGSC0003DMT400049413	Potato	endoplasmic reticulum, peroxisome, plastid	50.18	49.82
OQU92858	Sorghum	cytosol, peroxisome, plastid	54.15	48.7
HORVU4Hr1G060330.1	Barley	mitochondrion	55.96	48.44
PGSC0003DMT400022973	Potato	peroxisome	55.23	41.13
OQU91956	Sorghum	extracellular, peroxisome	46.57	40.31
PGSC0003DMT400034518	Potato	peroxisome	26.71	29.13
PGSC0003DMT400073652	Potato	cytosol, peroxisome, plastid	27.44	25.94
PGSC0003DMT400056868	Potato	cytosol, peroxisome, plastid	15.16	24.56

Protein Annotations

Gene3D:3.40.50.720	MapMan:50.1.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0055114	UniProt:M1BE67	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00106	PFAM:PF13561
EnsemblPlantsGene:PGSC0003DMG400016744	PGSC:PGSC0003DMG400016744	EnsemblPlants:PGSC0003DMT400043152	PRINTS:PR00080	PRINTS:PR00081	ScanProsite:PS00061
PANTHER:PTHR42898	PANTHER:PTHR42898:SF3	InterPro:SDR_fam	SUPFAM:SSF51735	InterPro:Sc_DH/Rdtase_CS	UniParc:UPI00029654BA

Description

Short chain alcohol dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400016744]

Coordinates

chr3:-:33875520..33883763

Molecular Weight (calculated)

30070.1 Da

IEP (calculated)

7.122

GRAVY (calculated)

0.121

Length

277 amino acids

Sequence
(BLAST)

001: MTALVTGGTR GIGHAVVEEL AELGATVYTC SRNEEALNKC LQEWSVKGLK VNGCVCDVSS TPQRVKLIEN VSSAFHGKLS ILINNAGTNI RKPTIDYTAE
101: EYAHLFGTNF ESGYHICQLA HPLLKASEVG SIVFISSVAG LVHLSTSSIY AATKGAMNQL TRDLACEWAK DNIRVNGVAP WYIKTSSVEY VIFLNPAYQF
201: HTITKRFSTD ICKLEVIKNK TLLDGIISRT PLMRPGEAQE VSSLVAYLCL PGASYITGQV IAVDGGFTVN GFDFTSY

Best Arabidopsis Sequence Match ( AT5G06060.1 )
(BLAST)

001: METDKRWSLA GKTALVTGGT RGIGRAVVEE LAKFGAKVHT CSRNQEELNA CLNDWKANGL VVSGSVCDAS VRDQREKLIQ EASSAFSGKL NILINNVGTN
101: VRKPTVEYSS EEYAKIMSTN LESAFHLSQI AHPLLKASGV GSIVFISSVA GLVHLSSGSI YGATKGALNQ LTRNLACEWA SDNIRTNCVA PWYIKTSLVE
201: TLLEKKEFVE AVVSRTPLGR VGEPEEVSSL VAFLCLPASS YITGQVISVD GGFTVNGFSY AMKP

Arabidopsis Description

Tropinone reductase homolog At5g06060 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHT0]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.