CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G209900.1	Wheat	peroxisome	64.12	71.48
TraesCS4A01G094500.1	Wheat	cytosol, peroxisome, plastid	63.46	70.48
GSMUA_Achr10P...	Banana	cytosol	59.14	65.68
VIT_13s0019g02180.t01	Wine grape	peroxisome, plasma membrane, plastid	58.47	65.67
CDY04977	Canola	peroxisome	56.48	64.64
CDY14094	Canola	peroxisome	56.48	64.64
CDX98899	Canola	peroxisome	56.15	64.5
Bra028744.1-P	Field mustard	cytosol	56.15	64.26
PGSC0003DMT400043159	Potato	mitochondrion	57.14	63.94
Solyc03g096640.2.1	Tomato	mitochondrion, plastid	56.81	63.81
AT5G06060.1	Thale cress	peroxisome	55.48	63.26
VIT_13s0019g02140.t01	Wine grape	peroxisome	56.15	62.36
KRG97856	Soybean	mitochondrion, plastid	55.81	61.76
Bra009159.1-P	Field mustard	cytosol, mitochondrion, peroxisome, plasma membrane	53.49	61.45
CDX70101	Canola	peroxisome	53.49	61.45
Os03t0269100-02	Rice	mitochondrion, plastid	62.79	61.36
VIT_13s0019g02130.t01	Wine grape	peroxisome	54.49	61.19
TraesCS4D01G210700.1	Wheat	plastid	64.12	60.88
KRH31026	Soybean	cytosol, mitochondrion, peroxisome, plastid	54.82	60.66
KRH31025	Soybean	plastid	55.48	60.29
KRH31007	Soybean	mitochondrion	54.15	60.15
CDY04975	Canola	mitochondrion	22.26	59.82
OQU92858	Sorghum	cytosol, peroxisome, plastid	59.47	58.12
KRG97857	Soybean	mitochondrion	47.51	57.2
KRG97870	Soybean	mitochondrion	47.18	56.8
HORVU4Hr1G060330.1	Barley	mitochondrion	59.14	55.62
EES10199	Sorghum	mitochondrion	48.17	54.51
KXG29038	Sorghum	mitochondrion, plastid	47.51	54.17
PGSC0003DMT400043152	Potato	peroxisome	49.83	54.15
KRH31021	Soybean	mitochondrion	53.49	53.14
EES10195	Sorghum	mitochondrion	46.51	53.03
Solyc03g096660.1.1	Tomato	extracellular	34.22	52.82
VIT_13s0019g02170.t01	Wine grape	mitochondrion, nucleus, peroxisome, plastid	49.83	52.63
KXG34055	Sorghum	plastid	46.84	50.9
EES10198	Sorghum	mitochondrion, plastid	44.52	49.45
KXG29040	Sorghum	cytosol, peroxisome, plastid	39.2	48.76
CDX98898	Canola	cytosol, peroxisome, plasma membrane	49.5	48.06
OQU84126	Sorghum	peroxisome	43.85	46.48
OQU91956	Sorghum	extracellular, peroxisome	47.18	44.38
EES19901	Sorghum	peroxisome	28.24	33.6
EER98384	Sorghum	peroxisome	26.91	32.02
EES11416	Sorghum	mitochondrion, peroxisome, plastid	24.92	25.25
EES11417	Sorghum	peroxisome	24.25	24.58
OQU77380	Sorghum	mitochondrion	25.25	23.24

Protein Annotations

Gene3D:3.40.50.720	MapMan:50.1.1	EntrezGene:8073643	UniProt:C5Y5Q0	EnsemblPlants:EES08074	ProteinID:EES08074
ProteinID:EES08074.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
GO:GO:0055114	InterPro:NAD(P)-bd_dom_sf	PFAM:PF13561	PRINTS:PR00080	PRINTS:PR00081	ScanProsite:PS00061
PANTHER:PTHR42898	PANTHER:PTHR42898:SF3	InterPro:SDR_fam	EnsemblPlantsGene:SORBI_3005G055300	SUPFAM:SSF51735	unigene:Sbi.3317
InterPro:Sc_DH/Rdtase_CS	UniParc:UPI0001A86066	RefSeq:XP_002449086.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr5:+:5579743..5580960

Molecular Weight (calculated)

31536.3 Da

IEP (calculated)

5.886

GRAVY (calculated)

-0.058

Length

301 amino acids

Sequence
(BLAST)

001: MAAARNDDTA TIISSEPAAG RSRWSLRGMT ALVTGGTRGI GRAVVEELAA LGAAVHTCSR NEAELRDRLA EWEAAAKTNG GGGVVTGSVC DVSARDQRER
101: LLRDVAERFG GKLNILVNNV GTNFGKPTAE YTAEDYAFLM STNLESAYHL CQLAYPLLKA PAAAAGNGNG GSVVLVSSVC GGVAVCTGSV YAMAKAGMNQ
201: LARNLACEWA GDGIRANSVA PWYTRTPLVE GDLSRGQYVE EILRRTPQRR VGEPEEISSL VAFLCMPCAS YITGQTIAVD GGMTVNGLYP SSSPSGLSYS
301: N

Best Arabidopsis Sequence Match ( AT5G06060.1 )
(BLAST)

001: METDKRWSLA GKTALVTGGT RGIGRAVVEE LAKFGAKVHT CSRNQEELNA CLNDWKANGL VVSGSVCDAS VRDQREKLIQ EASSAFSGKL NILINNVGTN
101: VRKPTVEYSS EEYAKIMSTN LESAFHLSQI AHPLLKASGV GSIVFISSVA GLVHLSSGSI YGATKGALNQ LTRNLACEWA SDNIRTNCVA PWYIKTSLVE
201: TLLEKKEFVE AVVSRTPLGR VGEPEEVSSL VAFLCLPASS YITGQVISVD GGFTVNGFSY AMKP

Arabidopsis Description

Tropinone reductase homolog At5g06060 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHT0]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.