CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10294
KRH23029
KRH24731
KRH24732
KRH24733
KRH24840
KRH29740
KRH29844

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06060.1	KRH24731	AT2G29330.1	21798944
AT5G06060.1	KRH24732	AT2G29330.1	21798944
AT5G06060.1	KRH24733	AT2G29330.1	21798944
AT5G06060.1	KRH29740	AT2G29330.1	21798944
AT5G06060.1	KRH24731	AT2G29360.1	21798944
AT5G06060.1	KRH24732	AT2G29360.1	21798944
AT5G06060.1	KRH24733	AT2G29360.1	21798944
AT5G06060.1	KRH29740	AT2G29360.1	21798944
AT5G06060.1	KRH10294	AT3G46090.1	17259181
AT5G06060.1	KRH23029	AT3G46090.1	17259181
AT5G06060.1	KRH24840	AT3G46090.1	17259181
AT5G06060.1	KRH29844	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97856	Soybean	mitochondrion, plastid	81.85	91.18
KRH31025	Soybean	plastid	75.91	83.03
KRH31026	Soybean	cytosol, mitochondrion, peroxisome, plastid	67.99	75.74
KRG97857	Soybean	mitochondrion	62.05	75.2
KRH31007	Soybean	mitochondrion	61.72	69.0
VIT_13s0019g02180.t01	Wine grape	peroxisome, plasma membrane, plastid	59.08	66.79
CDY04977	Canola	peroxisome	56.11	64.64
GSMUA_Achr10P...	Banana	cytosol	57.76	64.58
CDY14094	Canola	peroxisome	55.45	63.88
Bra028744.1-P	Field mustard	cytosol	55.45	63.88
AT5G06060.1	Thale cress	peroxisome	55.45	63.64
CDX98899	Canola	peroxisome	54.79	63.36
KRG97870	Soybean	mitochondrion	52.15	63.2
VIT_13s0019g02140.t01	Wine grape	peroxisome	54.46	60.89
Solyc03g096640.2.1	Tomato	mitochondrion, plastid	53.47	60.45
TraesCS4A01G094500.1	Wheat	cytosol, peroxisome, plastid	53.8	60.15
PGSC0003DMT400043159	Potato	mitochondrion	53.14	59.85
CDY04975	Canola	mitochondrion	22.11	59.82
VIT_13s0019g02130.t01	Wine grape	peroxisome	52.81	59.7
Bra009159.1-P	Field mustard	cytosol, mitochondrion, peroxisome, plasma membrane	51.49	59.54
CDX70101	Canola	peroxisome	51.49	59.54
TraesCS4B01G209900.1	Wheat	peroxisome	52.81	59.26
HORVU4Hr1G060350.3	Barley	plastid	53.14	59.19
Os03t0268900-02	Rice	plastid	52.48	58.89
TraesCS4A01G094400.1	Wheat	plastid	52.81	58.82
TraesCS4B01G210000.1	Wheat	plastid	52.81	58.82
KRH24733	Soybean	nucleus	51.16	58.49
TraesCS4D01G210800.1	Wheat	plastid	52.48	58.46
KRH24731	Soybean	nucleus	51.49	58.43
Os03t0269000-01	Rice	plastid	40.59	57.75
Zm00001d028575_P001	Maize	extracellular	51.82	57.51
PGSC0003DMT400043152	Potato	peroxisome	52.15	57.04
KRH24732	Soybean	cytosol, endoplasmic reticulum, plastid	50.16	56.51
Solyc03g096660.1.1	Tomato	extracellular	36.3	56.41
KRH00026	Soybean	cytosol, mitochondrion, peroxisome	48.51	55.68
KRH00030	Soybean	cytosol	48.18	54.89
VIT_13s0019g02170.t01	Wine grape	mitochondrion, nucleus, peroxisome, plastid	50.83	54.04
KRH49153	Soybean	cytosol	47.19	53.76
KRH24734	Soybean	extracellular, plasma membrane, vacuole	20.13	53.51
EES08074	Sorghum	plastid	53.14	53.49
KRH29741	Soybean	plastid	52.48	51.79
KRH49151	Soybean	mitochondrion	45.21	51.7
Os03t0269100-02	Rice	mitochondrion, plastid	52.15	51.3
TraesCS4D01G210700.1	Wheat	plastid	53.47	51.1
KRH00029	Soybean	peroxisome	16.17	50.0
OQU92858	Sorghum	cytosol, peroxisome, plastid	50.16	49.35
KRH29740	Soybean	cytosol	15.51	47.96
KRH49156	Soybean	plastid	27.06	47.95
HORVU4Hr1G060330.1	Barley	mitochondrion	49.51	46.88
CDX98898	Canola	cytosol, peroxisome, plasma membrane	47.19	46.13
KRH49152	Soybean	cytosol	44.22	45.42
OQU91956	Sorghum	extracellular, peroxisome	41.91	39.69
KRH00032	Soybean	cytosol, peroxisome, plastid	22.77	38.33
KRH02005	Soybean	endoplasmic reticulum, nucleus	24.42	29.37
KRH70902	Soybean	cytosol	10.56	29.09
KRH36525	Soybean	endoplasmic reticulum	23.76	28.24
KRH11511	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	23.43	27.84
KRG92837	Soybean	endoplasmic reticulum, nucleus	22.11	22.87
KRH33956	Soybean	endoplasmic reticulum	22.11	22.87
KRH68615	Soybean	cytosol, nucleus, plastid	16.17	22.17
KRG96884	Soybean	cytosol	21.45	22.03
KRH44885	Soybean	nucleus	21.45	21.81
KRH68572	Soybean	cytosol	21.45	21.67
KRH13054	Soybean	nucleus	21.12	21.48
KRH68573	Soybean	cytosol	18.81	20.73
KRH51046	Soybean	cytosol, peroxisome, plastid	21.78	20.69

Protein Annotations

EMBL:ACUP02007119	EnsemblPlants:KRH31021	EnsemblPlantsGene:GLYMA_11G222300	EntrezGene:100527615	Gene3D:3.40.50.720	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam	PANTHER:PTHR42898	PANTHER:PTHR42898:SF3
PFAM:PF13561	PRINTS:PR00080	PRINTS:PR00081	ProteinID:KRH31021	ProteinID:KRH31021.1	SUPFAM:SSF51735
TMHMM:TMhelix	UniParc:UPI0006EDA2E2	UniProt:A0A0R0HKM9	MapMan:50.1.1	:	:

Description

hypothetical protein

Coordinates

chr11:+:31740260..31744799

Molecular Weight (calculated)

33113.9 Da

IEP (calculated)

8.934

GRAVY (calculated)

0.003

Length

303 amino acids

Sequence
(BLAST)

001: MGIKRLGHTR FTLSNLFFNK QKTVSWKGVL EWKMAGSSIN RGERWSLNGM TALVTGGTRG IGHSIVSDLA AFGAAVHTCS RTQTELNKCL QEWQSQGFQV
101: TGSLCDVSSP PQREKLIQEV ASTFNGKLNI YVNNVGINIR KPTIEYTAEE YSQIMTVNLD SSFHLCQLAY PLLKASEKGS IVFISSVAGV VSLGTGAVFA
201: ASKAAINQLT KNLACDWAKD NIRSNCVVPW ATRTPVVEHL FKDQKFVDDI MSRTPIKRIA EPEEVSSLVN FLCLPAASFI TGQVICVDGG LTVNGFQPSM
301: RIT

Best Arabidopsis Sequence Match ( AT5G06060.1 )
(BLAST)

001: METDKRWSLA GKTALVTGGT RGIGRAVVEE LAKFGAKVHT CSRNQEELNA CLNDWKANGL VVSGSVCDAS VRDQREKLIQ EASSAFSGKL NILINNVGTN
101: VRKPTVEYSS EEYAKIMSTN LESAFHLSQI AHPLLKASGV GSIVFISSVA GLVHLSSGSI YGATKGALNQ LTRNLACEWA SDNIRTNCVA PWYIKTSLVE
201: TLLEKKEFVE AVVSRTPLGR VGEPEEVSSL VAFLCLPASS YITGQVISVD GGFTVNGFSY AMKP

Arabidopsis Description

Tropinone reductase homolog At5g06060 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHT0]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.