CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 2
peroxisome 4
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11511	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	98.04	98.04
KRH02005	Soybean	endoplasmic reticulum, nucleus	77.65	78.57
Solyc04g014670.2.1	Tomato	plastid	74.51	75.1
PGSC0003DMT400034518	Potato	peroxisome	72.16	72.44
CDY27447	Canola	cytosol, mitochondrion, peroxisome	72.16	71.32
CDX76382	Canola	cytosol, mitochondrion, peroxisome	71.37	70.82
Bra020854.1-P	Field mustard	cytosol, mitochondrion, peroxisome	70.98	70.43
CDX94534	Canola	peroxisome	70.2	70.2
Bra029476.1-P	Field mustard	peroxisome	69.8	69.8
CDY16690	Canola	peroxisome	69.8	69.8
CDY35231	Canola	peroxisome	33.73	69.35
AT4G05530.1	Thale cress	peroxisome	69.02	69.29
Os09t0133200-01	Rice	peroxisome	66.27	66.8
KRH70902	Soybean	cytosol	28.63	66.36
TraesCS5D01G169300.1	Wheat	peroxisome	65.49	66.01
TraesCS5A01G164400.1	Wheat	peroxisome	65.49	66.01
GSMUA_Achr3P01040_001	Banana	cytosol	24.71	65.62
HORVU0Hr1G012410.1	Barley	peroxisome	65.1	65.61
EER98384	Sorghum	peroxisome	64.71	65.22
Zm00001d019439_P001	Maize	extracellular	64.71	65.22
TraesCS5B01G161900.1	Wheat	peroxisome	64.31	64.82
EES19901	Sorghum	peroxisome	63.53	64.03
GSMUA_Achr3P01030_001	Banana	mitochondrion	49.41	57.01
Zm00001d038897_P001	Maize	peroxisome	61.18	55.91
HORVU5Hr1G049670.1	Barley	peroxisome	49.41	49.8
KRH00026	Soybean	cytosol, mitochondrion, peroxisome	32.16	31.06
KRH31026	Soybean	cytosol, mitochondrion, peroxisome, plastid	32.55	30.51
KRH49153	Soybean	cytosol	31.76	30.45
KRH00030	Soybean	cytosol	31.76	30.45
KRH24733	Soybean	nucleus	30.98	29.81
KRH49151	Soybean	mitochondrion	30.98	29.81
KRH24731	Soybean	nucleus	30.98	29.59
KRH31007	Soybean	mitochondrion	30.59	28.78
KRH24732	Soybean	cytosol, endoplasmic reticulum, plastid	29.8	28.25
KRH31025	Soybean	plastid	30.59	28.16
KRH24734	Soybean	extracellular, plasma membrane, vacuole	12.55	28.07
KRH49156	Soybean	plastid	18.82	28.07
KRG97856	Soybean	mitochondrion, plastid	29.41	27.57
KRH00029	Soybean	peroxisome	10.59	27.55
KRH00032	Soybean	cytosol, peroxisome, plastid	18.82	26.67
KRH49152	Soybean	cytosol	30.59	26.44
KRG97870	Soybean	mitochondrion	25.88	26.4
KRH68615	Soybean	cytosol, nucleus, plastid	22.35	25.79
KRH68572	Soybean	cytosol	30.2	25.67
KRG96884	Soybean	cytosol	29.41	25.42
KRH33956	Soybean	endoplasmic reticulum	29.02	25.26
KRG92837	Soybean	endoplasmic reticulum, nucleus	28.63	24.91
KRH29741	Soybean	plastid	29.8	24.76
KRH68573	Soybean	cytosol	26.67	24.73
KRH51046	Soybean	cytosol, peroxisome, plastid	29.8	23.82
KRH31021	Soybean	mitochondrion	28.24	23.76
KRG97857	Soybean	mitochondrion	23.14	23.6
KRH44885	Soybean	nucleus	26.67	22.82
KRH13054	Soybean	nucleus	26.67	22.82
KRH29740	Soybean	cytosol	8.63	22.45

Protein Annotations

Gene3D:3.40.50.720	MapMan:35.1	EMBL:ACUP02005380	EnsemblPlantsGene:GLYMA_09G008900	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	UniProt:I1KZX6	EnsemblPlants:KRH36525
ProteinID:KRH36525	ProteinID:KRH36525.1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF13561	PRINTS:PR00080	PRINTS:PR00081
ScanProsite:PS00061	PANTHER:PTHR43943	PANTHER:PTHR43943:SF2	InterPro:SDR_fam	SUPFAM:SSF51735	InterPro:Sc_DH/Rdtase_CS
UniParc:UPI00023CB485	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:693646..696632

Molecular Weight (calculated)

27200.2 Da

IEP (calculated)

9.855

GRAVY (calculated)

0.090

Length

255 amino acids

Sequence
(BLAST)

001: MERTKYGKRF QGKVAIVTAS TLGIGFSIAE RLGLEGASVV ISSRKQKNVD EAAGKLRAKG IEVLAVVCHV SNAQQRKNLI DKTLQKYGKI DVVVSNAAVH
101: PSVDPILQTQ ESILDKLWEI NVKSTILLLK DAAPHLKKGS SVVLIASLVA YNPPPTMAMY GVTKTAVLGL TKALASEMGP NTRVNCVVPG IVPTHFVALY
201: TSNDATREEL ERKALLGRLG TTEDMAAVTA FLASDDASYI TGENLVVSGG MPSRL

Best Arabidopsis Sequence Match ( AT4G05530.1 )
(BLAST)

001: MEKKLPRRLE GKVAIVTAST QGIGFGITER FGLEGASVVV SSRKQANVDE AVAKLKSKGI DAYGIVCHVS NAQHRRNLVE KTVQKYGKID IVVCNAAANP
101: STDPILSSKE AVLDKLWEIN VKSSILLLQD MAPHLEKGSS VIFITSIAGF SPQGAMAMYG VTKTALLGLT KALAAEMAPD TRVNAVAPGF VPTHFASFIT
201: GSSEVREGIE EKTLLNRLGT TGDMAAAAAF LASDDSSYIT GETLVVAGGM PSRL

Arabidopsis Description

SDRAShort-chain dehydrogenase/reductase SDRA [Source:UniProtKB/Swiss-Prot;Acc:Q9S9W2]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.