Factsheet for Bra020854.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, cytosol

Predictor Summary:

cytosol 3
peroxisome 4
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76382	Canola	cytosol, mitochondrion, peroxisome	99.61	99.61
Bra029476.1-P	Field mustard	peroxisome	83.66	84.31
KRH02005	Soybean	endoplasmic reticulum, nucleus	70.04	71.43
KRH36525	Soybean	endoplasmic reticulum	70.43	70.98
Solyc04g014670.2.1	Tomato	plastid	69.65	70.75
KRH11511	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	70.04	70.59
PGSC0003DMT400034518	Potato	peroxisome	68.87	69.69
Zm00001d019439_P001	Maize	extracellular	65.76	66.8
EER98384	Sorghum	peroxisome	64.98	66.01
TraesCS5D01G169300.1	Wheat	peroxisome	64.59	65.61
TraesCS5A01G164400.1	Wheat	peroxisome	63.81	64.82
EES19901	Sorghum	peroxisome	63.81	64.82
HORVU0Hr1G012410.1	Barley	peroxisome	63.81	64.82
GSMUA_Achr3P01040_001	Banana	cytosol	24.12	64.58
TraesCS5B01G161900.1	Wheat	peroxisome	63.42	64.43
Os09t0133200-01	Rice	peroxisome	61.87	62.85
GSMUA_Achr3P01030_001	Banana	mitochondrion	50.58	58.82
Zm00001d038897_P001	Maize	peroxisome	63.03	58.06
KRH70902	Soybean	cytosol	22.57	52.73
HORVU5Hr1G049670.1	Barley	peroxisome	47.47	48.22
Bra009159.1-P	Field mustard	cytosol, mitochondrion, peroxisome, plasma membrane	33.07	32.44
Bra028744.1-P	Field mustard	cytosol	31.91	31.18
Bra031575.1-P	Field mustard	plastid	30.74	30.15
Bra018400.1-P	Field mustard	cytosol, nucleus, plastid	30.35	29.77
Bra039974.1-P	Field mustard	cytosol, plasma membrane, plastid	30.35	29.66
Bra039513.1-P	Field mustard	peroxisome	29.96	29.39
Bra039971.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	29.96	29.39
Bra039969.1-P	Field mustard	cytosol	29.96	29.28
Bra039967.1-P	Field mustard	plastid	29.57	29.01
Bra000477.1-P	Field mustard	plastid	29.57	29.01
Bra018391.1-P	Field mustard	cytosol	29.57	29.01
Bra018399.1-P	Field mustard	cytosol, peroxisome, plastid	29.57	29.01
Bra039755.1-P	Field mustard	mitochondrion	29.96	28.95
Bra039973.1-P	Field mustard	plastid	29.18	28.63
Bra039514.1-P	Field mustard	cytosol, peroxisome, plastid	29.18	28.63
Bra015580.1-P	Field mustard	mitochondrion	29.57	28.57
Bra018404.1-P	Field mustard	cytosol	20.62	28.49
Bra018401.1-P	Field mustard	cytosol	28.02	28.46
Bra000476.1-P	Field mustard	cytosol, peroxisome, plastid	28.79	28.24
Bra018393.1-P	Field mustard	cytosol	28.79	28.24
Bra039976.1-P	Field mustard	cytosol	29.57	28.04
Bra018405.1-P	Field mustard	cytosol	28.4	27.86
Bra018396.1-P	Field mustard	cytosol	28.02	27.48
Bra027962.1-P	Field mustard	cytosol	18.29	27.17
Bra030683.1-P	Field mustard	cytosol, mitochondrion, plastid	27.63	27.1
Bra018402.1-P	Field mustard	cytosol	22.96	26.94
Bra039977.1-P	Field mustard	plastid	19.07	25.39
Bra039966.1-P	Field mustard	cytosol	28.4	25.35
Bra021324.1-P	Field mustard	cytosol	26.46	23.53
Bra001471.1-P	Field mustard	peroxisome	26.46	22.82
Bra027961.1-P	Field mustard	cytosol	26.85	22.77
Bra034728.1-P	Field mustard	cytosol	25.29	22.11
Bra029705.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	11.67	18.4
VIT_00s0516g00030.t01	Wine grape	cytosol, peroxisome	69.26	17.3

Protein Annotations

Gene3D:3.40.50.720	MapMan:35.1	EnsemblPlantsGene:Bra020854	EnsemblPlants:Bra020854.1	EnsemblPlants:Bra020854.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	UniProt:M4DWG0
InterPro:NAD(P)-bd_dom_sf	PFAM:PF13561	PRINTS:PR00080	PRINTS:PR00081	ScanProsite:PS00061	PANTHER:PTHR43943
PANTHER:PTHR43943:SF2	InterPro:SDR_fam	SUPFAM:SSF51735	InterPro:Sc_DH/Rdtase_CS	UniParc:UPI0002545E05	SEG:seg

Description

AT4G05530 (E=2e-098) IBR1, SDRA | IBR1 (INDOLE-3-BUTYRIC ACID RESPONSE 1); binding / catalytic/ oxidoreductase

Coordinates

chrA08:+:11672979..11674362

Molecular Weight (calculated)

27421.3 Da

IEP (calculated)

8.693

GRAVY (calculated)

0.070

Length

257 amino acids

Sequence
(BLAST)

001: MEKKKKVVPK RLQGKVAIVT ASTQGIGFGI VERLGLEGAS VVVSSPKQKN VDEAVEKLKA QEIDAFGIVC HVSNAQHRQI LVQKTIQRYG KIDIVVCNAA
101: VNPSTDPILS TQESALDKLW EVNVKSSILL LQDIAPHLEK GSSVIFITSI AAFQPQVPTA MYGVTKTALL GLTKALAAEM GPDTRVNAVA PGVVPTHFAS
201: FITRNSEVRR ASEEKTLLNR LGTTDDMAAA TAFLASDDAD YITGETLVVA GGMPSRL

Best Arabidopsis Sequence Match ( AT4G05530.1 )
(BLAST)

001: MEKKLPRRLE GKVAIVTAST QGIGFGITER FGLEGASVVV SSRKQANVDE AVAKLKSKGI DAYGIVCHVS NAQHRRNLVE KTVQKYGKID IVVCNAAANP
101: STDPILSSKE AVLDKLWEIN VKSSILLLQD MAPHLEKGSS VIFITSIAGF SPQGAMAMYG VTKTALLGLT KALAAEMAPD TRVNAVAPGF VPTHFASFIT
201: GSSEVREGIE EKTLLNRLGT TGDMAAAAAF LASDDSSYIT GETLVVAGGM PSRL

Arabidopsis Description

SDRAShort-chain dehydrogenase/reductase SDRA [Source:UniProtKB/Swiss-Prot;Acc:Q9S9W2]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.