Factsheet for Bra000476.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

cytosol 3
plastid 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000476.1-P
Bra031575.1-P
Bra039514.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G29310.1	Bra031575.1-P	AT1G07450.1	21798944
AT2G29310.1	Bra000476.1-P	AT2G29310.1	21798944
AT2G29310.1	Bra039514.1-P	AT2G29310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039514.1-P	Field mustard	cytosol, peroxisome, plastid	99.62	99.62
Bra018404.1-P	Field mustard	cytosol	59.54	83.87
Bra039513.1-P	Field mustard	peroxisome	83.21	83.21
Bra018402.1-P	Field mustard	cytosol	69.47	83.11
Bra039973.1-P	Field mustard	plastid	82.82	82.82
Bra018405.1-P	Field mustard	cytosol	82.82	82.82
Bra000477.1-P	Field mustard	plastid	82.06	82.06
Bra039967.1-P	Field mustard	plastid	82.06	82.06
Bra039971.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	82.06	82.06
CDX95752	Canola	cytosol	73.66	81.09
AT2G29310.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	80.92	80.92
Bra018401.1-P	Field mustard	cytosol	77.1	79.84
Bra018399.1-P	Field mustard	cytosol, peroxisome, plastid	79.77	79.77
Bra018391.1-P	Field mustard	cytosol	79.01	79.01
Bra018400.1-P	Field mustard	cytosol, nucleus, plastid	78.63	78.63
Bra018396.1-P	Field mustard	cytosol	77.86	77.86
Bra018393.1-P	Field mustard	cytosol	77.1	77.1
Bra039974.1-P	Field mustard	cytosol, plasma membrane, plastid	76.72	76.43
Bra039969.1-P	Field mustard	cytosol	76.34	76.05
Bra030683.1-P	Field mustard	cytosol, mitochondrion, plastid	68.7	68.7
Bra015580.1-P	Field mustard	mitochondrion	69.08	68.05
Bra039966.1-P	Field mustard	cytosol	74.05	67.36
Bra031575.1-P	Field mustard	plastid	67.18	67.18
Bra039755.1-P	Field mustard	mitochondrion	66.41	65.41
Bra027962.1-P	Field mustard	cytosol	40.46	61.27
VIT_06s0004g05320.t01	Wine grape	endoplasmic reticulum, peroxisome, plastid	58.78	61.11
Bra009159.1-P	Field mustard	cytosol, mitochondrion, peroxisome, plasma membrane	61.07	61.07
Bra028744.1-P	Field mustard	cytosol	61.07	60.84
Solyc03g096650.1.1	Tomato	cytosol	20.61	60.67
Bra039977.1-P	Field mustard	plastid	44.66	60.62
VIT_06s0004g05370.t01	Wine grape	peroxisome	58.02	60.32
VIT_06s0004g05380.t01	Wine grape	plastid	61.07	59.26
Bra039976.1-P	Field mustard	cytosol	61.07	59.04
KRH24731	Soybean	nucleus	59.92	58.8
KRH24733	Soybean	nucleus	59.16	58.49
VIT_06s0004g05400.t01	Wine grape	cytosol	24.43	57.66
VIT_06s0004g05430.t01	Wine grape	mitochondrion, nucleus, peroxisome	59.16	57.41
VIT_06s0004g05440.t01	Wine grape	cytosol	17.94	57.32
KRH24732	Soybean	cytosol, endoplasmic reticulum, plastid	58.4	56.88
VIT_06s0004g05330.t01	Wine grape	peroxisome	54.96	56.69
VIT_06s0004g05310.t01	Wine grape	cytosol	24.43	56.64
VIT_06s0004g05360.t01	Wine grape	cytosol, mitochondrion, plastid	51.15	55.83
Bra027961.1-P	Field mustard	cytosol	58.78	50.83
KRH29740	Soybean	cytosol	18.32	48.98
VIT_06s0004g05390.t01	Wine grape	cytosol, plasma membrane, plastid	45.8	48.78
VIT_06s0004g05450.t01	Wine grape	plasma membrane	33.21	48.33
Bra029705.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	27.48	44.17
GSMUA_Achr5P04570_001	Banana	cytosol	21.37	44.09
Bra029476.1-P	Field mustard	peroxisome	29.39	30.2
Bra020854.1-P	Field mustard	cytosol, mitochondrion, peroxisome	28.24	28.79
Bra021324.1-P	Field mustard	cytosol	27.1	24.57
Bra034728.1-P	Field mustard	cytosol	25.57	22.79
Bra001471.1-P	Field mustard	peroxisome	24.81	21.81

Protein Annotations

EnsemblPlants:Bra000476.1	EnsemblPlants:Bra000476.1-P	EnsemblPlantsGene:Bra000476	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam
PANTHER:PTHR42898	PANTHER:PTHR42898:SF7	PFAM:PF13561	PRINTS:PR00080	PRINTS:PR00081	SUPFAM:SSF51735
UniParc:UPI000253FFA3	UniProt:M4C8E8	MapMan:50.1.1	:	:	:

Description

AT2G29340 (E=2e-124) | short-chain dehydrogenase/reductase (SDR) family protein

Coordinates

chrA03:-:11289314..11290418

Molecular Weight (calculated)

27942.2 Da

IEP (calculated)

5.931

GRAVY (calculated)

0.108

Length

262 amino acids

Sequence
(BLAST)

001: MDKRWSLQGM TALVTGGAGG IGHAIVDELS AFGARIHVCD ISETLLSQSL SEWEKKGFQV SGSVCDVTSR PERETLIQTV SSLFDGKLNI LVNNVGGLRE
101: KPTTEYGSDD FTFHISINVE AAFHFCQLSH PLLKASGFGS IVFTSSVAGV VSFSCGSLYG LAKGALNQLA RNLACEWAKD GIRANAVAPN SIRTPWSQQF
201: LDDVSFKEAL FSRTPLGRIG EPNEVASLVA FLCLPAASYI TGQTICADGG LTVNGFSYQP HA

Best Arabidopsis Sequence Match ( AT2G29300.1 )
(BLAST)

001: MDKRWSLQGM TALVTGAASG IGYAIVEELA GFGARIHVCD ISETLLNQSL REWEKKGFQV SGSVCDVTSR PEREKLMQTV SSLFDGKLNI LVNNVGVLRA
101: KPTTEYVADD FTFHISTNLE AAYHFCQLSH PLLKTSGYGS IVFLSSVSGV VSITDCGSLY GLTKGALNQL ARNLACEWAK DGIRANAVAP NVVKTAQSQF
201: FLQDVSKKEG LFSRTPLGRS GEPNEVASLV VFLCLPAASY ITGQTICIDG GLTVYGFSSQ PQA

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IKL5]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.