Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 1
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 4
- golgi 2
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
VIT_06s0004g05320.t01 | Wine grape | endoplasmic reticulum, peroxisome, plastid | 78.33 | 55.95 |
VIT_06s0004g05330.t01 | Wine grape | peroxisome | 78.89 | 55.91 |
VIT_06s0004g05430.t01 | Wine grape | mitochondrion, nucleus, peroxisome | 80.0 | 53.33 |
VIT_06s0004g05380.t01 | Wine grape | plastid | 79.44 | 52.96 |
CDY16436 | Canola | endoplasmic reticulum, vacuole | 28.33 | 48.57 |
Bra018404.1-P | Field mustard | cytosol | 47.78 | 46.24 |
Bra039977.1-P | Field mustard | plastid | 47.78 | 44.56 |
VIT_06s0004g05280.t01 | Wine grape | cytosol, nucleus, peroxisome | 61.11 | 43.65 |
VIT_06s0004g05370.t01 | Wine grape | peroxisome | 60.56 | 43.25 |
VIT_06s0004g05390.t01 | Wine grape | cytosol, plasma membrane, plastid | 58.33 | 42.68 |
Bra018402.1-P | Field mustard | cytosol | 51.67 | 42.47 |
CDY45441 | Canola | cytosol | 51.11 | 41.07 |
VIT_13s0019g02180.t01 | Wine grape | peroxisome, plasma membrane, plastid | 57.78 | 38.81 |
AT2G29360.1 | Thale cress | cytosol | 57.78 | 38.38 |
VIT_06s0004g05360.t01 | Wine grape | cytosol, mitochondrion, plastid | 49.44 | 37.08 |
VIT_08s0007g00900.t01 | Wine grape | mitochondrion, plastid | 53.89 | 37.02 |
AT1G07440.1 | Thale cress | mitochondrion | 54.44 | 36.84 |
VIT_08s0007g00890.t01 | Wine grape | peroxisome | 51.11 | 36.8 |
CDX97897 | Canola | cytosol, extracellular | 47.22 | 36.8 |
Bra015580.1-P | Field mustard | mitochondrion | 53.89 | 36.47 |
Bra039755.1-P | Field mustard | mitochondrion | 53.89 | 36.47 |
CDY06706 | Canola | mitochondrion | 53.89 | 36.47 |
CDY10276 | Canola | mitochondrion | 53.89 | 36.47 |
CDY14610 | Canola | mitochondrion | 53.89 | 36.47 |
CDY16437 | Canola | mitochondrion | 53.89 | 36.47 |
CDY52942 | Canola | mitochondrion | 53.89 | 36.47 |
AT2G29350.1 | Thale cress | plastid | 54.44 | 36.43 |
AT2G29290.2 | Thale cress | plastid | 52.78 | 36.26 |
Bra018391.1-P | Field mustard | cytosol | 52.78 | 36.26 |
CDY40175 | Canola | plasma membrane | 52.78 | 36.26 |
Bra031575.1-P | Field mustard | plastid | 52.22 | 35.88 |
CDX86486 | Canola | cytosol, peroxisome, plastid | 52.22 | 35.88 |
CDY09917 | Canola | cytosol | 52.22 | 35.88 |
AT1G07450.1 | Thale cress | cytosol, nucleus, peroxisome | 51.67 | 35.77 |
AT2G29330.1 | Thale cress | cytosol, peroxisome, plastid | 51.67 | 35.77 |
Bra030683.1-P | Field mustard | cytosol, mitochondrion, plastid | 51.67 | 35.5 |
CDY06260 | Canola | plastid | 51.67 | 35.5 |
CDY68057 | Canola | cytosol | 51.67 | 35.5 |
AT2G29150.1 | Thale cress | peroxisome | 52.78 | 35.45 |
AT2G29370.1 | Thale cress | peroxisome | 52.78 | 35.45 |
VIT_13s0019g02130.t01 | Wine grape | peroxisome | 52.78 | 35.45 |
VIT_13s0019g02140.t01 | Wine grape | peroxisome | 53.33 | 35.42 |
Bra039969.1-P | Field mustard | cytosol | 51.67 | 35.36 |
Bra039974.1-P | Field mustard | cytosol, plasma membrane, plastid | 51.67 | 35.36 |
KRH24731 | Soybean | nucleus | 52.22 | 35.21 |
Bra018393.1-P | Field mustard | cytosol | 51.11 | 35.11 |
Bra018396.1-P | Field mustard | cytosol | 51.11 | 35.11 |
Bra018400.1-P | Field mustard | cytosol, nucleus, plastid | 51.11 | 35.11 |
CDX95753 | Canola | cytosol, peroxisome, plastid | 51.11 | 35.11 |
CDY40183 | Canola | plastid | 51.11 | 35.11 |
CDY40188 | Canola | cytosol, peroxisome, plasma membrane | 51.11 | 35.11 |
CDY45434 | Canola | cytosol, nucleus, plastid | 51.11 | 35.11 |
CDY45438 | Canola | cytosol | 51.11 | 35.11 |
CDY62820 | Canola | cytosol, endoplasmic reticulum, peroxisome | 51.11 | 34.98 |
CDY40179 | Canola | cytosol, peroxisome, plastid | 50.56 | 34.87 |
VIT_08s0007g00920.t01 | Wine grape | peroxisome | 51.67 | 34.83 |
Bra018401.1-P | Field mustard | cytosol | 48.89 | 34.78 |
AT2G30670.1 | Thale cress | cytosol, nucleus, peroxisome | 50.56 | 34.73 |
Bra000477.1-P | Field mustard | plastid | 50.56 | 34.73 |
CDX83306 | Canola | plastid | 50.56 | 34.73 |
CDX86485 | Canola | cytosol, peroxisome, plastid | 50.56 | 34.73 |
CDY40165 | Canola | plastid | 50.56 | 34.73 |
Bra018405.1-P | Field mustard | cytosol | 50.0 | 34.35 |
Bra039971.1-P | Field mustard | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 50.0 | 34.35 |
CDY31768 | Canola | cytosol, peroxisome, plastid | 50.0 | 34.35 |
CDY45432 | Canola | cytosol | 50.0 | 34.35 |
CDX97893 | Canola | mitochondrion | 51.67 | 34.32 |
CDY09823 | Canola | peroxisome | 51.67 | 34.32 |
CDY09824 | Canola | mitochondrion | 51.67 | 34.32 |
AT2G29310.1 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 49.44 | 33.97 |
Bra039967.1-P | Field mustard | plastid | 49.44 | 33.97 |
Bra039973.1-P | Field mustard | plastid | 49.44 | 33.97 |
CDY31772 | Canola | cytosol, peroxisome, plastid | 49.44 | 33.97 |
Bra039976.1-P | Field mustard | cytosol | 51.11 | 33.95 |
CDY31776 | Canola | cytosol, peroxisome, plastid | 51.11 | 33.95 |
Bra039513.1-P | Field mustard | peroxisome | 48.89 | 33.59 |
Bra039514.1-P | Field mustard | cytosol, peroxisome, plastid | 48.89 | 33.59 |
CDY31773 | Canola | plastid | 48.89 | 33.59 |
CDY40185 | Canola | plastid | 48.89 | 33.59 |
Bra000476.1-P | Field mustard | cytosol, peroxisome, plastid | 48.33 | 33.21 |
CDX83307 | Canola | peroxisome | 48.33 | 33.21 |
CDX97899 | Canola | peroxisome | 48.33 | 33.21 |
CDY51372 | Canola | plastid | 51.11 | 32.97 |
CDX95750 | Canola | cytosol | 50.0 | 32.85 |
KRH24733 | Soybean | nucleus | 48.33 | 32.83 |
CDX95751 | Canola | peroxisome | 47.78 | 32.82 |
AT2G29320.1 | Thale cress | mitochondrion | 48.89 | 32.71 |
KRH24732 | Soybean | cytosol, endoplasmic reticulum, plastid | 48.89 | 32.71 |
Bra039966.1-P | Field mustard | cytosol | 52.22 | 32.64 |
Bra018399.1-P | Field mustard | cytosol, peroxisome, plastid | 46.11 | 31.68 |
CDY45435 | Canola | cytosol, peroxisome, plastid | 46.11 | 31.68 |
CDX97895 | Canola | cytosol | 41.11 | 31.49 |
CDY31774 | Canola | cytosol | 41.11 | 31.49 |
CDY40186 | Canola | cytosol | 36.11 | 31.4 |
CDY40182 | Canola | cytosol, peroxisome, plastid | 45.56 | 31.3 |
CDY45433 | Canola | cytosol | 42.22 | 31.02 |
Bra027961.1-P | Field mustard | cytosol | 50.56 | 30.03 |
AT2G29340.1 | Thale cress | cytosol, endoplasmic reticulum, peroxisome | 49.44 | 28.99 |
CDY40171 | Canola | cytosol | 35.56 | 28.96 |
VIT_13s0019g02170.t01 | Wine grape | mitochondrion, nucleus, peroxisome, plastid | 45.56 | 28.77 |
CDY31770 | Canola | plastid | 36.67 | 28.45 |
AT2G29300.2 | Thale cress | extracellular | 44.44 | 27.97 |
CDX97890 | Canola | cytosol | 50.56 | 26.84 |
CDY40177 | Canola | cytosol | 41.11 | 26.71 |
CDX95752 | Canola | cytosol | 33.89 | 25.63 |
Bra027962.1-P | Field mustard | cytosol | 23.89 | 24.86 |
VIT_06s0004g05310.t01 | Wine grape | cytosol | 15.56 | 24.78 |
CDY64214 | Canola | mitochondrion | 23.33 | 24.56 |
CDY65683 | Canola | cytosol, mitochondrion | 52.22 | 23.56 |
VIT_06s0004g05400.t01 | Wine grape | cytosol | 13.89 | 22.52 |
VIT_17s0000g08740.t01 | Wine grape | cytosol | 13.33 | 19.51 |
CDY31767 | Canola | plastid | 52.22 | 16.7 |
KRH29740 | Soybean | cytosol | 8.89 | 16.33 |
VIT_19s0085g00500.t01 | Wine grape | peroxisome | 23.33 | 14.14 |
VIT_01s0011g01520.t01 | Wine grape | peroxisome | 22.78 | 13.8 |
VIT_14s0128g00340.t01 | Wine grape | plastid | 23.89 | 12.61 |
CDY50145 | Canola | plastid | 50.56 | 12.57 |
GSMUA_Achr5P04570_001 | Banana | cytosol | 7.22 | 10.24 |
Solyc03g096650.1.1 | Tomato | cytosol | 3.89 | 7.87 |
AT2G29170.1 | Thale cress | cytosol | 3.33 | 5.61 |
CDY72061 | Canola | cytosol | 2.78 | 4.59 |
VIT_00s0516g00030.t01 | Wine grape | cytosol, peroxisome | 24.44 | 4.28 |
VIT_06s0004g05440.t01 | Wine grape | cytosol | 1.67 | 3.66 |
Protein Annotations
ArrayExpress:VIT_06s0004g05450 | EMBL:FN594951 | EnsemblPlants:VIT_06s0004g05450.t01 | EnsemblPlantsGene:VIT_06s0004g05450 | Gene3D:3.40.50.720 | GO:GO:0005575 |
GO:GO:0016020 | GO:GO:0016021 | InterPro:NAD(P)-bd_dom_sf | InterPro:SDR_fam | PANTHER:PTHR42898 | PANTHER:PTHR42898:SF7 |
PFAM:PF13561 | PRINTS:PR00081 | ProteinID:CBI16059 | ProteinID:CBI16059.3 | SEG:seg | SUPFAM:SSF51735 |
TMHMM:TMhelix | UniParc:UPI0001BE0DD9 | UniProt:D7SK83 | MapMan:50.1.1 | : | : |
Description
No Description!
Coordinates
chr6:+:6302405..6311893
Molecular Weight (calculated)
19717.4 Da
IEP (calculated)
8.741
GRAVY (calculated)
0.524
Length
180 amino acids
Sequence
(BLAST)
(BLAST)
001: MIWFKVLFPI NNAAIIIQKP TVRVTAEEFS AIMAINFESA YHLSQLAYPI LKALGAMGSV VFISFVASIV AVKHLSTCSV TKGAMNQLTK NLACGWAEDN
101: IRSNAVASWY IKTPMVDQML SNKTFLGKVI NRTPLCRVGD PKEVSSLVAF LCLPTSFYII GQTICVDSGM IVNGFEPNLF
101: IRSNAVASWY IKTPMVDQML SNKTFLGKVI NRTPLCRVGD PKEVSSLVAF LCLPTSFYII GQTICVDSGM IVNGFEPNLF
001: MVLDMASHLY TNPPQNLHFI SSSSSLKPHL CLSFKRINPK HKSSSSSVFV PYASQSSIAI TSKERWSLNG MSALVTGGTR GIGRAIVEEL AGLGAEVHTC
101: ARNEYELENC LSDWNRSGFR VAGSVCDVSD RSQREALMET VSSVFEGKLH ILVNNVGTNI RKPMVEFTAG EFSTLMSTNF ESVFHLCQLA YPLLRESKAG
201: SVVFISSVSG FVSLKNMSVQ SSTKGAINQL TRSLACEWAK DNIRINAVAP WYIKTSMVEQ VLSNKEYLEE VYSVTPLGRL GEPREVSSAV AFLCLPASSY
301: ITGQILCVDG GMSINGFFPR HD
101: ARNEYELENC LSDWNRSGFR VAGSVCDVSD RSQREALMET VSSVFEGKLH ILVNNVGTNI RKPMVEFTAG EFSTLMSTNF ESVFHLCQLA YPLLRESKAG
201: SVVFISSVSG FVSLKNMSVQ SSTKGAINQL TRSLACEWAK DNIRINAVAP WYIKTSMVEQ VLSNKEYLEE VYSVTPLGRL GEPREVSSAV AFLCLPASSY
301: ITGQILCVDG GMSINGFFPR HD
Arabidopsis Description
Tropinone reductase homolog At2g29260, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZW12]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.