Factsheet for VIT_14s0128g00340.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400073652	Potato	cytosol, peroxisome, plastid	65.1	75.77
AT3G05260.1	Thale cress	cytosol	60.41	71.28
KRG96884	Soybean	cytosol	61.0	70.51
CDY27781	Canola	cytosol, peroxisome, plastid	59.24	69.9
GSMUA_Achr4P24690_001	Banana	cytosol	60.7	69.46
KRH68573	Soybean	cytosol	55.43	68.73
KRH68572	Soybean	cytosol	59.82	68.0
Solyc01g098850.2.1	Tomato	extracellular	67.16	67.35
GSMUA_Achr4P29030_001	Banana	cytosol	56.01	65.41
OQU77380	Sorghum	mitochondrion	60.12	62.69
TraesCS1A01G083800.1	Wheat	plastid	63.34	62.25
TraesCS1D01G084900.1	Wheat	mitochondrion, plastid	63.05	61.96
TraesCS1B01G101100.1	Wheat	plastid	63.05	61.78
Os05t0140800-01	Rice	plastid	61.0	56.99
Zm00001d006796_P001	Maize	extracellular	58.36	55.59
CDY05152	Canola	cytosol	38.71	55.23
HORVU1Hr1G018140.5	Barley	extracellular, mitochondrion	63.93	54.64
VIT_06s0004g05310.t01	Wine grape	cytosol	9.97	30.09
VIT_08s0007g00890.t01	Wine grape	peroxisome	21.99	30.0
VIT_08s0007g00920.t01	Wine grape	peroxisome	23.46	29.96
VIT_08s0007g00900.t01	Wine grape	mitochondrion, plastid	22.87	29.77
VIT_06s0004g05400.t01	Wine grape	cytosol	9.68	29.73
VIT_06s0004g05320.t01	Wine grape	endoplasmic reticulum, peroxisome, plastid	21.7	29.37
VIT_13s0019g02180.t01	Wine grape	peroxisome, plasma membrane, plastid	22.87	29.1
VIT_06s0004g05380.t01	Wine grape	plastid	22.87	28.89
VIT_17s0000g08740.t01	Wine grape	cytosol	10.26	28.46
VIT_19s0085g00500.t01	Wine grape	peroxisome	24.63	28.28
VIT_06s0004g05280.t01	Wine grape	cytosol, nucleus, peroxisome	20.82	28.17
VIT_06s0004g05370.t01	Wine grape	peroxisome	20.82	28.17
VIT_06s0004g05440.t01	Wine grape	cytosol	6.74	28.05
VIT_06s0004g05430.t01	Wine grape	mitochondrion, nucleus, peroxisome	21.99	27.78
VIT_13s0019g02140.t01	Wine grape	peroxisome	21.99	27.68
VIT_13s0019g02130.t01	Wine grape	peroxisome	21.41	27.24
VIT_06s0004g05330.t01	Wine grape	peroxisome	19.94	26.77
VIT_01s0011g01520.t01	Wine grape	peroxisome	23.17	26.6
VIT_06s0004g05360.t01	Wine grape	cytosol, mitochondrion, plastid	18.18	25.83
VIT_06s0004g05450.t01	Wine grape	plasma membrane	12.61	23.89
VIT_06s0004g05390.t01	Wine grape	cytosol, plasma membrane, plastid	16.42	22.76
VIT_13s0019g02170.t01	Wine grape	mitochondrion, nucleus, peroxisome, plastid	18.18	21.75
VIT_00s0516g00030.t01	Wine grape	cytosol, peroxisome	18.77	6.22

Protein Annotations

EntrezGene:100256303	wikigene:100256303	Gene3D:3.40.50.720	MapMan:35.1	EMBL:AM463419	ProteinID:CAN77025
ProteinID:CAN77025.1	ProteinID:CCB59903	ProteinID:CCB59903.1	UniProt:F6HYY9	EMBL:FN596501	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	EntrezGene:LOC100256303
wikigene:LOC100256303	InterPro:NAD(P)-bd_dom_sf	PFAM:PF13561	PRINTS:PR00080	PRINTS:PR00081	ScanProsite:PS00061
PANTHER:PTHR43348	PANTHER:PTHR43348:SF4	InterPro:SDR_fam	SUPFAM:SSF51735	InterPro:Sc_DH/Rdtase_CS	UniParc:UPI0002108325
ArrayExpress:VIT_14s0128g00340	EnsemblPlantsGene:VIT_14s0128g00340	EnsemblPlants:VIT_14s0128g00340.t01	RefSeq:XP_002284803	RefSeq:XP_002284803.2	SEG:seg

Description

No Description!

Coordinates

chr14:-:2975422..2976800

Molecular Weight (calculated)

37407.7 Da

IEP (calculated)

8.342

GRAVY (calculated)

-0.240

Length

341 amino acids

Sequence
(BLAST)

001: MFSSILSSSR PVSSLACVTH LRLEFPPVRT GLPATRDNPR RALLQRTMAS GGGQQFPPQR QERQPGKEHV MTPTPQFINP DYRPAHKLQG KVALVTGGDS
101: GIGRAVCYLY ALEGATVAFT YVKVQEDRDA QETLQMIRKA KRDDAKEPIA IAADLGYDDN CRRVVEEVVA AYGRIDILVN NAAEQYKSCS VEEIDEERLE
201: RVFRTNIFSY FLLTRHALKY MQEGSSIINT TSINAYKGNN KLIEYTSTKG AIVAFIRSLA LQLAPKGIRV NGVAPGPIWT PLIPASFSEE ECARFGSEVP
301: MGRAGQPCEV APSYVFLASH ADSSYISGQV LHPNGGVVVN A

Best Arabidopsis Sequence Match ( AT1G54870.2 )
(BLAST)

001: MAMNVLCRVF TSSRVLSSNV TFSFSQIPNN TKKPLLEKRR LSPRVCLRAM ASEKQKQHAQ PGKEHVMESS PQFSSSDYQP SNKLRGKVAL ITGGDSGIGR
101: AVGYCFASEG ATVAFTYVKG QEEKDAQETL QMLKEVKTSD SKEPIAIPTD LGFDENCKRV VDEVVNAFGR IDVLINNAAE QYESSTIEEI DEPRLERVFR
201: TNIFSYFFLT RHALKHMKEG SSIINTTSVN AYKGNASLLD YTATKGAIVA FTRGLALQLA EKGIRVNGVA PGPIWTPLIP ASFNEEKIKN FGSEVPMKRA
301: GQPIEVAPSY VFLACNHCSS YFTGQVLHPN GGAVVNA

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:TAIR;Acc:AT1G54870]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.