Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, extracellular
Predictor Summary:
Predictor Summary:
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
26928395
|
msms PMID:
26928395
doi
Agricultural and Environmental Proteomics, Department of Systems Biology, Technical University of Denmark , Søltofts Plads, Building 224, DK-2800 Kgs. Lyngby, Denmark., Enzyme and Protein Chemistry, Department of Systems Biology, Technical University of Denmark , Elektrovej, Building 375, DK-2800 Kgs. Lyngby, Denmark.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G083800.1 | Wheat | plastid | 84.96 | 97.69 |
| TraesCS1D01G084900.1 | Wheat | mitochondrion, plastid | 84.21 | 96.83 |
| TraesCS1B01G101100.1 | Wheat | plastid | 83.96 | 96.26 |
| OQU77380 | Sorghum | mitochondrion | 61.15 | 74.62 |
| KRG92837 | Soybean | endoplasmic reticulum, nucleus | 52.63 | 71.67 |
| GSMUA_Achr4P24690_001 | Banana | cytosol | 53.38 | 71.48 |
| KRH33956 | Soybean | endoplasmic reticulum | 52.38 | 71.33 |
| CDY17559 | Canola | cytoskeleton, nucleus, peroxisome | 50.88 | 70.73 |
| Bra021324.1-P | Field mustard | cytosol | 51.13 | 70.59 |
| CDY43488 | Canola | cytosol | 50.88 | 70.24 |
| AT3G05260.1 | Thale cress | cytosol | 50.63 | 69.9 |
| PGSC0003DMT400073652 | Potato | cytosol, peroxisome, plastid | 51.13 | 69.62 |
| Zm00001d006796_P001 | Maize | extracellular | 62.16 | 69.27 |
| CDY27781 | Canola | cytosol, peroxisome, plastid | 49.87 | 68.86 |
| Os05t0140800-01 | Rice | plastid | 62.16 | 67.95 |
| KRH68615 | Soybean | cytosol, nucleus, plastid | 36.34 | 65.61 |
| KRH68573 | Soybean | cytosol | 45.11 | 65.45 |
| KRH68572 | Soybean | cytosol | 48.87 | 65.0 |
| KRG96884 | Soybean | cytosol | 47.62 | 64.41 |
| VIT_14s0128g00340.t01 | Wine grape | plastid | 54.64 | 63.93 |
| GSMUA_Achr4P29030_001 | Banana | cytosol | 46.62 | 63.7 |
| AT1G54870.2 | Thale cress | plastid | 53.13 | 62.91 |
| Solyc01g098850.2.1 | Tomato | extracellular | 51.88 | 60.88 |
| CDY05152 | Canola | cytosol | 33.33 | 55.65 |
| HORVU1Hr1G086200.3 | Barley | peroxisome, plastid | 21.05 | 31.34 |
| HORVU3Hr1G097180.1 | Barley | peroxisome, plastid | 21.05 | 30.32 |
| HORVU4Hr1G060350.3 | Barley | plastid | 20.55 | 30.15 |
| HORVU1Hr1G084560.2 | Barley | extracellular, mitochondrion, plastid | 19.55 | 29.66 |
| HORVU0Hr1G012410.1 | Barley | peroxisome | 18.55 | 29.25 |
| HORVU1Hr1G086190.1 | Barley | peroxisome | 13.28 | 27.32 |
| HORVU5Hr1G122860.4 | Barley | nucleus, peroxisome, plastid | 18.8 | 26.69 |
| HORVU3Hr1G090170.2 | Barley | mitochondrion, plastid | 20.3 | 26.38 |
| HORVU2Hr1G091780.5 | Barley | mitochondrion, plastid | 17.54 | 25.93 |
| HORVU2Hr1G098920.1 | Barley | peroxisome | 19.05 | 25.42 |
| HORVU5Hr1G007770.4 | Barley | peroxisome | 17.54 | 25.27 |
| HORVU0Hr1G027400.1 | Barley | peroxisome | 12.53 | 24.88 |
| HORVU5Hr1G049670.1 | Barley | peroxisome | 14.04 | 22.13 |
| HORVU4Hr1G060330.1 | Barley | mitochondrion | 16.29 | 20.31 |
Protein Annotations
| EnsemblPlants:HORVU1Hr1G018140.5 | EnsemblPlantsGene:HORVU1Hr1G018140 | Gene3D:3.40.50.720 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016491 | GO:GO:0055114 | InterPro:NAD(P)-bd_dom_sf | InterPro:SDR_fam | InterPro:Sc_DH/Rdtase_CS |
| PANTHER:PTHR43348 | PANTHER:PTHR43348:SF4 | PFAM:PF13561 | PRINTS:PR00080 | PRINTS:PR00081 | ScanProsite:PS00061 |
| SEG:seg | SUPFAM:SSF51735 | UniParc:UPI000B486D25 | UniProt:A0A287ESJ7 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chrchr1H:-:65592292..65593858
Molecular Weight (calculated)
43007.6 Da
IEP (calculated)
9.970
GRAVY (calculated)
-0.267
Length
399 amino acids
Sequence
(BLAST)
(BLAST)
001: LGLHSVTRTR AVSPRGGDSC ETRATSVATR HARAASLHLY IGPLPPSAFH RAMSALLATP TRAQPFLLLL HRLRPNQLRP LPTTRALASF AASSPRAPPA
101: RRGTRAMASQ KFPPQQQDCQ PGKEHAMDPR PEAIIKNYKS ANKLQGKVAL VTGGDSGIGR AVCLCLALEG ATVNFTYVKG HEDKDAEETL QALRDIKSRT
201: GAGEPKALSG DLGYEENCRR VVEEVANAHG GRVDILVNNA AEQYVRPCIT EITEQDLERV FRTNIFSYFL MTKFAVKHMG PGSSIINTTS VNAYKGNATL
301: LDYTATKGAI VAFTRALSMQ LAEKGIRVNG VAPGPIWTPL IPASFPEEKV KQFGSEVPMK RAGQPSEVAP SFVFLASEQD SSYISGQILH PNGGTIVNS
101: RRGTRAMASQ KFPPQQQDCQ PGKEHAMDPR PEAIIKNYKS ANKLQGKVAL VTGGDSGIGR AVCLCLALEG ATVNFTYVKG HEDKDAEETL QALRDIKSRT
201: GAGEPKALSG DLGYEENCRR VVEEVANAHG GRVDILVNNA AEQYVRPCIT EITEQDLERV FRTNIFSYFL MTKFAVKHMG PGSSIINTTS VNAYKGNATL
301: LDYTATKGAI VAFTRALSMQ LAEKGIRVNG VAPGPIWTPL IPASFPEEKV KQFGSEVPMK RAGQPSEVAP SFVFLASEQD SSYISGQILH PNGGTIVNS
001: MNVLCRVFTS SRVLSSNVTF SFSQIPNNTK KPLLEKRRLS PRVCLRAMAS EKQKQHAQPG KEHVMESSPQ FSSSDYQPSN KLRGKVALIT GGDSGIGRAV
101: GYCFASEGAT VAFTYVKGQE EKDAQETLQM LKEVKTSDSK EPIAIPTDLG FDENCKRVVD EVVNAFGRID VLINNAAEQY ESSTIEEIDE PRLERVFRTN
201: IFSYFFLTRH ALKHMKEGSS IINTTSVNAY KGNASLLDYT ATKGAIVAFT RGLALQLAEK GIRVNGVAPG PIWTPLIPAS FNEEKIKNFG SEVPMKRAGQ
301: PIEVAPSYVF LACNHCSSYF TGQVLHPNGG AVVNA
101: GYCFASEGAT VAFTYVKGQE EKDAQETLQM LKEVKTSDSK EPIAIPTDLG FDENCKRVVD EVVNAFGRID VLINNAAEQY ESSTIEEIDE PRLERVFRTN
201: IFSYFFLTRH ALKHMKEGSS IINTTSVNAY KGNASLLDYT ATKGAIVAFT RGLALQLAEK GIRVNGVAPG PIWTPLIPAS FNEEKIKNFG SEVPMKRAGQ
301: PIEVAPSYVF LACNHCSSYF TGQVLHPNGG AVVNA
Arabidopsis Description
NAD(P)-binding Rossmann-fold superfamily protein [Source:TAIR;Acc:AT1G54870]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.