Factsheet for Solyc01g098850.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 7
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

extracellular: 28847647
extracellular: 29876421

msms PMID: 28847647 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA. Electronic address: jabadia@eead.csic.es.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400073652	Potato	cytosol, peroxisome, plastid	85.29	98.98
AT3G05260.1	Thale cress	cytosol	62.94	74.05
CDY27781	Canola	cytosol, peroxisome, plastid	62.35	73.36
KRG96884	Soybean	cytosol	62.94	72.54
GSMUA_Achr4P24690_001	Banana	cytosol	62.65	71.48
KRH68573	Soybean	cytosol	57.35	70.91
KRH68572	Soybean	cytosol	61.76	70.0
VIT_14s0128g00340.t01	Wine grape	plastid	67.35	67.16
GSMUA_Achr4P29030_001	Banana	cytosol	55.88	65.07
OQU77380	Sorghum	mitochondrion	58.82	61.16
TraesCS1D01G084900.1	Wheat	mitochondrion, plastid	61.47	60.23
TraesCS1A01G083800.1	Wheat	plastid	61.18	59.94
TraesCS1B01G101100.1	Wheat	plastid	60.88	59.48
Os05t0140800-01	Rice	plastid	62.94	58.63
Zm00001d006796_P001	Maize	extracellular	60.29	57.26
CDY05152	Canola	cytosol	40.0	56.9
HORVU1Hr1G018140.5	Barley	extracellular, mitochondrion	60.88	51.88
Solyc03g096650.1.1	Tomato	cytosol	8.53	32.58
Solyc06g083490.2.1	Tomato	cytosol, peroxisome, plastid	17.65	32.43
Solyc06g083480.2.1	Tomato	cytosol	12.06	31.78
Solyc10g086620.1.1	Tomato	plastid	24.41	30.4
Solyc10g081560.1.1	Tomato	cytosol, nucleus, peroxisome	23.53	30.3
Solyc03g096640.2.1	Tomato	mitochondrion, plastid	23.53	29.85
Solyc04g054950.2.1	Tomato	mitochondrion, peroxisome, plastid	22.94	29.66
Solyc09g011130.1.1	Tomato	plastid	22.94	29.66
Solyc09g011140.2.1	Tomato	cytosol	23.53	29.63
Solyc06g083470.2.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	23.24	29.37
Solyc04g007400.2.1	Tomato	cytosol	21.18	27.59
Solyc07g066630.2.1	Tomato	plastid	23.82	27.09
Solyc03g096660.1.1	Tomato	extracellular	15.0	26.15
Solyc06g005720.2.1	Tomato	plastid	22.65	25.58
Solyc04g014670.2.1	Tomato	plastid	18.82	25.3

Protein Annotations

EnsemblPlants:Solyc01g098850.2.1	EnsemblPlantsGene:Solyc01g098850.2	Gene3D:3.40.50.720	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam	InterPro:Sc_DH/Rdtase_CS
PANTHER:PTHR43348	PANTHER:PTHR43348:SF4	PFAM:PF13561	PRINTS:PR00080	PRINTS:PR00081	ScanProsite:PS00061
SEG:seg	SUPFAM:SSF51735	UniParc:UPI0002768995	UniProt:K4B0S2	MapMan:35.1	:

Description

No Description!

Coordinates

chr1:-:89243679..89245468

Molecular Weight (calculated)

37061.1 Da

IEP (calculated)

8.378

GRAVY (calculated)

-0.246

Length

340 amino acids

Sequence
(BLAST)

001: MCSRFLPCSA RAFSSTFTTH LISPCNFFTN TTKRGRSYPP VNIIARSMAS GGQTFPPQKQ QTQPGKEHAM DPTPHYSSQD YKPANKLRGK IALVTGGDSG
101: IGRAVCHCFA LEGATVAFTY VKSQEEKDAQ DTLKLLMQAK AADAKDPMAV PTDLGFDDNC KRVVDEVVSS YGRIDILVNN AAEQYEASSV EEINEERLER
201: VFRTNIFSYF FVTRHALKHM KEGSSIINTT SVNAYKGNAK LLDYTATKGA IVAFTRGLAL QLVERGIRVN GVAPGPVWTP LIPASFSEEE CANFGKQVPM
301: KRAAQPIEVA PSYVFLASCP ESSYITGQVI HPNGGTIVNA

Best Arabidopsis Sequence Match ( AT1G54870.2 )
(BLAST)

001: MAMNVLCRVF TSSRVLSSNV TFSFSQIPNN TKKPLLEKRR LSPRVCLRAM ASEKQKQHAQ PGKEHVMESS PQFSSSDYQP SNKLRGKVAL ITGGDSGIGR
101: AVGYCFASEG ATVAFTYVKG QEEKDAQETL QMLKEVKTSD SKEPIAIPTD LGFDENCKRV VDEVVNAFGR IDVLINNAAE QYESSTIEEI DEPRLERVFR
201: TNIFSYFFLT RHALKHMKEG SSIINTTSVN AYKGNASLLD YTATKGAIVA FTRGLALQLA EKGIRVNGVA PGPIWTPLIP ASFNEEKIKN FGSEVPMKRA
301: GQPIEVAPSY VFLACNHCSS YFTGQVLHPN GGAVVNA

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:TAIR;Acc:AT1G54870]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.