Factsheet for Os05t0140800-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

nucleus: 26035336
plastid: 27992503

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU77380	Sorghum	mitochondrion	65.48	73.09
TraesCS1A01G083800.1	Wheat	plastid	68.22	71.76
GSMUA_Achr4P24690_001	Banana	cytosol	58.08	71.14
PGSC0003DMT400073652	Potato	cytosol, peroxisome, plastid	56.99	70.99
Zm00001d006796_P001	Maize	extracellular	69.32	70.67
TraesCS1D01G084900.1	Wheat	mitochondrion, plastid	66.85	70.32
KRG92837	Soybean	endoplasmic reticulum, nucleus	56.44	70.31
TraesCS1B01G101100.1	Wheat	plastid	66.85	70.11
KRH33956	Soybean	endoplasmic reticulum	55.62	69.28
CDY17559	Canola	cytoskeleton, nucleus, peroxisome	54.25	68.99
Bra021324.1-P	Field mustard	cytosol	54.52	68.86
CDY43488	Canola	cytosol	54.25	68.51
AT3G05260.1	Thale cress	cytosol	52.33	66.09
CDY27781	Canola	cytosol, peroxisome, plastid	51.78	65.4
GSMUA_Achr4P29030_001	Banana	cytosol	51.23	64.04
KRH68572	Soybean	cytosol	52.33	63.67
KRG96884	Soybean	cytosol	51.23	63.39
Solyc01g098850.2.1	Tomato	extracellular	58.63	62.94
KRH68615	Soybean	cytosol, nucleus, plastid	38.08	62.9
KRH68573	Soybean	cytosol	47.12	62.55
HORVU1Hr1G018140.5	Barley	extracellular, mitochondrion	67.95	62.16
VIT_14s0128g00340.t01	Wine grape	plastid	56.99	61.0
AT1G54870.2	Thale cress	plastid	55.07	59.64
CDY05152	Canola	cytosol	33.15	50.63
Os01t0931000-00	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	14.25	34.21
Os01t0930900-00	Rice	mitochondrion	23.01	29.89
Os11t0443700-01	Rice	plastid	21.1	29.62
Os11t0438700-02	Rice	plastid	21.37	29.55
Os11t0654400-00	Rice	mitochondrion	21.37	29.21
Os11t0652900-00	Rice	cytosol	16.71	28.91
Os03t0268900-02	Rice	plastid	21.37	28.89
Os03t0269000-01	Rice	plastid	16.71	28.64
Os09t0133200-01	Rice	peroxisome	18.9	27.27
Os04t0614000-01	Rice	cytosol	21.64	26.42
Os03t0269100-02	Rice	mitochondrion, plastid	19.73	23.38
Os04t0269100-00	Rice	plastid	12.05	17.32
Os11t0438000-02	Rice	cytosol	5.75	15.56

Protein Annotations

Gene3D:3.40.50.720	MapMan:35.1	ProteinID:BAF16514.1	ProteinID:BAS92193.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:NAD(P)-bd_dom_sf	EnsemblPlantsGene:Os05g0140800
EnsemblPlants:Os05t0140800-01	PFAM:PF13561	PRINTS:PR00080	PRINTS:PR00081	ScanProsite:PS00061	PANTHER:PTHR43348
PANTHER:PTHR43348:SF4	UniProt:Q0DKV9	InterPro:SDR_fam	SUPFAM:SSF51735	InterPro:Sc_DH/Rdtase_CS	UniParc:UPI00003589B4
SEG:seg	:	:	:	:	:

Description

Similar to Dormancy related protein (Fragment). (Os05t0140800-01)

Coordinates

chr5:-:2345391..2346836

Molecular Weight (calculated)

38990.6 Da

IEP (calculated)

9.128

GRAVY (calculated)

-0.188

Length

365 amino acids

Sequence
(BLAST)

001: MRALSLARAS SPPPLLLHLR RALAPASSSS PAPVLLLRPA VSCSSLFVSD RAAAARRSSG SSRRSMASQQ FPPQNQETQP GKEHAMDPRP EAIIQSYKPA
101: NKLKDKVAIV TGGDSGIGRA VCLCFALEGA TVAFTYVKGQ EEKDAEETLR ALRDIRARTG AKDPMAIPAD LGYDDNCRKV VDEVAGAYGG AIDILVNNAA
201: EQYERPSITD ITEDDLERVF RTNIFSYFFM SKHAVKRMRD RRGGAGAGGC SIINTSSINA YKGNKTLLDY TATKGAIVAF TRALALQLAE EGIRVNGVAP
301: GPIWTPLIPA SFAEEKVRQF GSQVPMGRAG QPSEVAPSFV FLASDDASYM SGQMLHVNGG VIVNG

Best Arabidopsis Sequence Match ( AT1G54870.2 )
(BLAST)

001: MAMNVLCRVF TSSRVLSSNV TFSFSQIPNN TKKPLLEKRR LSPRVCLRAM ASEKQKQHAQ PGKEHVMESS PQFSSSDYQP SNKLRGKVAL ITGGDSGIGR
101: AVGYCFASEG ATVAFTYVKG QEEKDAQETL QMLKEVKTSD SKEPIAIPTD LGFDENCKRV VDEVVNAFGR IDVLINNAAE QYESSTIEEI DEPRLERVFR
201: TNIFSYFFLT RHALKHMKEG SSIINTTSVN AYKGNASLLD YTATKGAIVA FTRGLALQLA EKGIRVNGVA PGPIWTPLIP ASFNEEKIKN FGSEVPMKRA
301: GQPIEVAPSY VFLACNHCSS YFTGQVLHPN GGAVVNA

Arabidopsis Description

NAD(P)-binding Rossmann-fold superfamily protein [Source:TAIR;Acc:AT1G54870]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.