Factsheet for Os04t0614000-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
peroxisome 5
cytosol 1

Predictors

GFP

MS/MS

Papers

cytosol: 19685898

msms PMID: 19685898 doi

KA Doroshenk, AJ Crofts, RT Morris, JJ Wyrick, TW Okita

Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164-6340, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d026290_P001	Maize	peroxisome	91.3	91.61
HORVU2Hr1G098920.1	Barley	peroxisome	91.3	91.3
EES11416	Sorghum	mitochondrion, peroxisome, plastid	90.64	91.25
TraesCS2A01G422500.1	Wheat	golgi, peroxisome	90.97	90.97
TraesCS2B01G441000.1	Wheat	peroxisome	90.97	90.97
TraesCS2D01G418900.1	Wheat	peroxisome	90.97	90.97
Zm00001d002332_P026	Maize	peroxisome	89.63	90.24
EES11417	Sorghum	peroxisome	88.96	89.56
GSMUA_Achr3P23590_001	Banana	peroxisome	80.6	81.14
GSMUA_Achr2P01480_001	Banana	peroxisome	79.93	80.47
VIT_17s0000g08740.t01	Wine grape	cytosol	32.78	79.67
PGSC0003DMT400056868	Potato	cytosol, peroxisome, plastid	43.14	75.44
AT3G12800.1	Thale cress	peroxisome	73.24	73.49
Solyc07g066630.2.1	Tomato	plastid	72.91	72.91
CDX73802	Canola	peroxisome	72.24	72.48
CDY08402	Canola	cytosol	71.24	72.45
Bra034728.1-P	Field mustard	cytosol	71.24	72.45
CDY00799	Canola	peroxisome	71.91	72.15
Bra001471.1-P	Field mustard	peroxisome	71.57	71.81
KRH13054	Soybean	nucleus	71.57	71.81
KRH44885	Soybean	nucleus	69.9	70.13
Os11t0438700-02	Rice	plastid	27.76	31.44
Os11t0443700-01	Rice	plastid	27.09	31.15
Os09t0133200-01	Rice	peroxisome	25.08	29.64
Os11t0652900-00	Rice	cytosol	20.4	28.91
Os11t0654400-00	Rice	mitochondrion	25.42	28.46
Os03t0268900-02	Rice	plastid	25.08	27.78
Os03t0269000-01	Rice	plastid	19.06	26.76
Os01t0931000-00	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	13.04	25.66
Os01t0930900-00	Rice	mitochondrion	23.08	24.56
Os03t0269100-02	Rice	mitochondrion, plastid	23.75	23.05
Os11t0438000-02	Rice	cytosol	10.37	22.96
Os05t0140800-01	Rice	plastid	26.42	21.64
Os04t0269100-00	Rice	plastid	15.38	18.11

Protein Annotations

EnsemblPlants:Os04t0614000-01	EnsemblPlantsGene:Os04g0614000	EntrezGene:4336980	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam
PANTHER:PTHR43296	PANTHER:PTHR43296:SF1	PFAM:PF13561	PRINTS:PR00080	PRINTS:PR00081	ProteinID:BAF15774.1
ProteinID:BAS90985.1	ProteinID:CAE05217.2	RefSeq:XP_015635702.1	SEG:seg	SUPFAM:SSF51735	UniParc:UPI00001B2046
UniProt:Q7XLC5	MapMan:5.7.3.5.3	:	:	:	:

Description

Similar to Peroxisomal 2,4-dienoyl-CoA reductase (EC 1.3.1.34). (Os04t0614000-01)

Coordinates

chr4:+:31139226..31141511

Molecular Weight (calculated)

31731.5 Da

IEP (calculated)

9.961

GRAVY (calculated)

-0.036

Length

299 amino acids

Sequence
(BLAST)

001: MAVESPFRAD VLRGKAALVT GGGSGIGFEI AAQLARHGAH VAIMGRRREV LDKAVAALRS HGLRAVGFEG DVRKQEDAAR VVAATVQHFG KLDILVNGAA
101: GNFLASPEDL TPKGFRTVVD IDTVGTYTMC YEALKYLKKG GPGKGPSTGG VIINISATLH YTAAWYQIHV SAAKAGVDSI TRSLALEWGT DYDIRVNGIA
201: PGPIEGTPGM RKLAPEEMAK GSREIMPLFK LGEKWDIAMA ALYLASDAGK YVNGTTVVVD GGLWLSRPRH IPKEEVKELS KVVEKKVRAS GVGVPSSKL

Best Arabidopsis Sequence Match ( AT3G12800.1 )
(BLAST)

001: MDSPFKPDVV RGQVALITGG GSGIGFEISS QFGKHGASIA IMGRRKQVLD DAVSALRSLG IQAIGLEGDV RKQEDARRVV EATFQHFGKL DILVNAAAGN
101: FLAAAEDLSP NGFRTVLDID AVGTFNMCHA ALKYLKKGAP GRDSSSGGGS IINISATLHY TASWYQIHVS AAKAAVDATT RNLALEWGTD YDIRVNGIAP
201: GPIGGTPGMS KLVPEEIENK TREYMPLYKV GEKWDIAMAA LYLSCDSGKY VSGLTMVVDG GLWLSKPRHL PKEAVKQLSR AVEKRSRAKP VGLPTSKL

Arabidopsis Description

SDRBUncharacterized protein At3g12790 [Source:UniProtKB/TrEMBL;Acc:Q0WMN4]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.