CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 2
peroxisome 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, peroxisome
BaCelLo:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	peroxisome
PProwler:	peroxisome
PTS1:	peroxisome
WoLF PSORT:	cytosol
YLoc:	peroxisome

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44885	Soybean	nucleus	95.64	95.64
VIT_19s0085g00500.t01	Wine grape	peroxisome	85.91	86.2
CDX73802	Canola	peroxisome	83.22	83.22
Bra034728.1-P	Field mustard	cytosol	81.21	82.31
CDY08402	Canola	cytosol	81.21	82.31
Bra001471.1-P	Field mustard	peroxisome	82.21	82.21
CDY00799	Canola	peroxisome	81.54	81.54
AT3G12800.1	Thale cress	peroxisome	80.54	80.54
Solyc07g066630.2.1	Tomato	plastid	80.54	80.27
PGSC0003DMT400056868	Potato	cytosol, peroxisome, plastid	45.97	80.12
VIT_01s0011g01520.t01	Wine grape	peroxisome	77.18	77.44
GSMUA_Achr2P01480_001	Banana	peroxisome	75.5	75.76
GSMUA_Achr3P23590_001	Banana	peroxisome	75.17	75.42
EES11416	Sorghum	mitochondrion, peroxisome, plastid	72.48	72.73
Zm00001d026290_P001	Maize	peroxisome	72.15	72.15
Os04t0614000-01	Rice	cytosol	71.81	71.57
TraesCS2D01G418900.1	Wheat	peroxisome	70.13	69.9
TraesCS2B01G441000.1	Wheat	peroxisome	70.13	69.9
HORVU2Hr1G098920.1	Barley	peroxisome	69.8	69.57
EES11417	Sorghum	peroxisome	69.13	69.36
TraesCS2A01G422500.1	Wheat	golgi, peroxisome	69.46	69.23
Zm00001d002332_P026	Maize	peroxisome	68.12	68.35
KRH00029	Soybean	peroxisome	9.73	29.59
KRH68615	Soybean	cytosol, nucleus, plastid	21.81	29.41
KRG92837	Soybean	endoplasmic reticulum, nucleus	27.85	28.33
KRH02005	Soybean	endoplasmic reticulum, nucleus	23.83	28.17
KRH49156	Soybean	plastid	15.77	27.49
KRG96884	Soybean	cytosol	27.18	27.46
KRH33956	Soybean	endoplasmic reticulum	26.85	27.3
KRH00026	Soybean	cytosol, mitochondrion, peroxisome	24.16	27.27
KRH11511	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	23.15	27.06
KRH36525	Soybean	endoplasmic reticulum	22.82	26.67
KRH68572	Soybean	cytosol	26.51	26.33
KRH68573	Soybean	cytosol	24.16	26.18
KRH24733	Soybean	nucleus	23.15	26.04
KRH49153	Soybean	cytosol	22.82	25.56
KRH24731	Soybean	nucleus	22.82	25.47
KRH70902	Soybean	cytosol	9.4	25.45
KRH24732	Soybean	cytosol, endoplasmic reticulum, plastid	22.82	25.28
KRH00030	Soybean	cytosol	22.15	24.81
KRH24734	Soybean	extracellular, plasma membrane, vacuole	9.4	24.56
KRH51046	Soybean	cytosol, peroxisome, plastid	26.17	24.45
KRH31007	Soybean	mitochondrion	22.15	24.35
KRG97856	Soybean	mitochondrion, plastid	21.81	23.9
KRH31025	Soybean	plastid	22.15	23.83
KRH49151	Soybean	mitochondrion	21.14	23.77
KRH00032	Soybean	cytosol, peroxisome, plastid	14.09	23.33
KRH31026	Soybean	cytosol, mitochondrion, peroxisome, plastid	20.81	22.79
KRH29741	Soybean	plastid	23.15	22.48
KRG97870	Soybean	mitochondrion	18.79	22.4
KRH49152	Soybean	cytosol	21.81	22.03
KRG97857	Soybean	mitochondrion	17.79	21.2
KRH31021	Soybean	mitochondrion	21.48	21.12
KRH29740	Soybean	cytosol	5.37	16.33

Protein Annotations

EMBL:ACUP02009529	EMBL:BT098956	EnsemblPlants:KRH13054	EnsemblPlantsGene:GLYMA_15G213100	EntrezGene:100793630	Gene3D:3.40.50.720
InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam	PANTHER:PTHR43296	PANTHER:PTHR43296:SF1	PFAM:PF13561	PRINTS:PR00080
PRINTS:PR00081	ProteinID:KRH13054	ProteinID:KRH13054.1	SEG:seg	SUPFAM:SSF51735	UniParc:UPI0001B17277
UniProt:C6TMK2	MapMan:5.7.3.5.3	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:-:33557937..33566087

Molecular Weight (calculated)

31898.3 Da

IEP (calculated)

9.822

GRAVY (calculated)

-0.087

Length

298 amino acids

Sequence
(BLAST)

001: MESPFKPEIL KGKVALITGG ASGIGFEIST QFGKHGASVA LMGRRKQVLQ SAVSVLQSLV IPAVGFEGDV RKQEDAARVV ESTFKHFGRI DILVNAAAGN
101: FLVSAEDLSS NGFRTVLDID SVGTFTMCHE ALKYLKKGGE GRSNSSSGGS IINISATLHY TASWYQIHVS AAKAAVDATT RNLALEWGTD YDIRVNGIAP
201: GPISGTPGMS KLAPDEISSK ARDYMPLYKL GEKWDIAMAA LFLASDAGKF VNGDTMIVDG GLWLSRPRHL EKEAVKQVSR SVEKRSRNVP VGVPKSKL

Best Arabidopsis Sequence Match ( AT3G12800.1 )
(BLAST)

001: MDSPFKPDVV RGQVALITGG GSGIGFEISS QFGKHGASIA IMGRRKQVLD DAVSALRSLG IQAIGLEGDV RKQEDARRVV EATFQHFGKL DILVNAAAGN
101: FLAAAEDLSP NGFRTVLDID AVGTFNMCHA ALKYLKKGAP GRDSSSGGGS IINISATLHY TASWYQIHVS AAKAAVDATT RNLALEWGTD YDIRVNGIAP
201: GPIGGTPGMS KLVPEEIENK TREYMPLYKV GEKWDIAMAA LYLSCDSGKY VSGLTMVVDG GLWLSKPRHL PKEAVKQLSR AVEKRSRAKP VGLPTSKL

Arabidopsis Description

SDRBUncharacterized protein At3g12790 [Source:UniProtKB/TrEMBL;Acc:Q0WMN4]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.