CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid, peroxisome, mitochondrion

Predictor Summary:

mitochondrion 4
cytosol 2
plastid 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10294
KRH23029
KRH24731
KRH24732
KRH24733
KRH24840
KRH29740
KRH29844

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06060.1	KRH24731	AT2G29330.1	21798944
AT5G06060.1	KRH24732	AT2G29330.1	21798944
AT5G06060.1	KRH24733	AT2G29330.1	21798944
AT5G06060.1	KRH29740	AT2G29330.1	21798944
AT5G06060.1	KRH24731	AT2G29360.1	21798944
AT5G06060.1	KRH24732	AT2G29360.1	21798944
AT5G06060.1	KRH24733	AT2G29360.1	21798944
AT5G06060.1	KRH29740	AT2G29360.1	21798944
AT5G06060.1	KRH10294	AT3G46090.1	17259181
AT5G06060.1	KRH23029	AT3G46090.1	17259181
AT5G06060.1	KRH24840	AT3G46090.1	17259181
AT5G06060.1	KRH29844	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97856	Soybean	mitochondrion, plastid	77.21	77.21
KRH31025	Soybean	plastid	77.57	76.17
KRH31007	Soybean	mitochondrion	70.22	70.48
KRG97857	Soybean	mitochondrion	63.6	69.2
VIT_13s0019g02180.t01	Wine grape	peroxisome, plasma membrane, plastid	67.28	68.28
KRH31021	Soybean	mitochondrion	75.74	67.99
GSMUA_Achr10P...	Banana	cytosol	66.91	67.16
CDY04977	Canola	peroxisome	63.6	65.78
AT5G06060.1	Thale cress	peroxisome	63.24	65.15
Bra028744.1-P	Field mustard	cytosol	62.87	65.02
CDY14094	Canola	peroxisome	62.87	65.02
CDX98899	Canola	peroxisome	62.5	64.89
KRG97870	Soybean	mitochondrion	59.56	64.8
VIT_13s0019g02140.t01	Wine grape	peroxisome	63.24	63.47
VIT_13s0019g02130.t01	Wine grape	peroxisome	62.13	63.06
PGSC0003DMT400043159	Potato	mitochondrion	62.13	62.83
Solyc03g096640.2.1	Tomato	mitochondrion, plastid	61.76	62.69
Bra009159.1-P	Field mustard	cytosol, mitochondrion, peroxisome, plasma membrane	59.56	61.83
CDX70101	Canola	peroxisome	59.56	61.83
KRH24731	Soybean	nucleus	59.93	61.05
CDY04975	Canola	mitochondrion	25.0	60.71
Os03t0268900-02	Rice	plastid	59.93	60.37
TraesCS4A01G094400.1	Wheat	plastid	60.29	60.29
HORVU4Hr1G060350.3	Barley	plastid	60.29	60.29
KRH24733	Soybean	nucleus	58.46	60.0
TraesCS4B01G210000.1	Wheat	plastid	59.93	59.93
TraesCS4B01G209900.1	Wheat	peroxisome	58.82	59.26
TraesCS4D01G210800.1	Wheat	plastid	59.19	59.19
Zm00001d028575_P001	Maize	extracellular	58.82	58.61
TraesCS4A01G094500.1	Wheat	cytosol, peroxisome, plastid	58.09	58.3
KRH00026	Soybean	cytosol, mitochondrion, peroxisome	56.25	57.95
Os03t0269000-01	Rice	plastid	44.85	57.28
KRH24732	Soybean	cytosol, endoplasmic reticulum, plastid	56.62	57.25
VIT_13s0019g02170.t01	Wine grape	mitochondrion, nucleus, peroxisome, plastid	59.93	57.19
PGSC0003DMT400043152	Potato	peroxisome	58.09	57.04
KRH00030	Soybean	cytosol	55.51	56.77
KRH24734	Soybean	extracellular, plasma membrane, vacuole	23.53	56.14
Solyc03g096660.1.1	Tomato	extracellular	40.07	55.9
EES08074	Sorghum	plastid	60.66	54.82
KRH49153	Soybean	cytosol	53.31	54.51
KRH49151	Soybean	mitochondrion	52.94	54.34
KRH00029	Soybean	peroxisome	19.49	54.08
KRH29741	Soybean	plastid	59.56	52.77
Os03t0269100-02	Rice	mitochondrion, plastid	58.82	51.95
OQU92858	Sorghum	cytosol, peroxisome, plastid	58.46	51.62
KRH49156	Soybean	plastid	32.35	51.46
KRH29740	Soybean	cytosol	18.38	51.02
TraesCS4D01G210700.1	Wheat	plastid	58.82	50.47
CDX98898	Canola	cytosol, peroxisome, plasma membrane	55.51	48.71
KRH49152	Soybean	cytosol	51.84	47.8
HORVU4Hr1G060330.1	Barley	mitochondrion	54.41	46.25
KRH00032	Soybean	cytosol, peroxisome, plastid	27.57	41.67
OQU91956	Sorghum	extracellular, peroxisome	47.06	40.0
KRH02005	Soybean	endoplasmic reticulum, nucleus	31.99	34.52
KRH36525	Soybean	endoplasmic reticulum	30.51	32.55
KRH11511	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	30.15	32.16
KRH70902	Soybean	cytosol	11.4	28.18
KRG96884	Soybean	cytosol	25.37	23.39
KRH33956	Soybean	endoplasmic reticulum	25.0	23.21
KRG92837	Soybean	endoplasmic reticulum, nucleus	25.0	23.21
KRH68573	Soybean	cytosol	22.43	22.18
KRH51046	Soybean	cytosol, peroxisome, plastid	25.74	21.94
KRH68615	Soybean	cytosol, nucleus, plastid	17.65	21.72
KRH68572	Soybean	cytosol	23.9	21.67
KRH44885	Soybean	nucleus	23.16	21.14
KRH13054	Soybean	nucleus	22.79	20.81

Protein Annotations

EMBL:ACUP02007119	EnsemblPlants:KRH31026	EnsemblPlantsGene:GLYMA_11G222500	EntrezGene:100775806	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf
InterPro:SDR_fam	PANTHER:PTHR42898	PANTHER:PTHR42898:SF3	PFAM:PF13561	PRINTS:PR00080	PRINTS:PR00081
ProteinID:KRH31026	ProteinID:KRH31026.1	SUPFAM:SSF51735	TMHMM:TMhelix	UniParc:UPI000233D13C	UniProt:I1LMI8
MapMan:50.1.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:+:31754247..31759504

Molecular Weight (calculated)

29364.4 Da

IEP (calculated)

8.133

GRAVY (calculated)

0.092

Length

272 amino acids

Sequence
(BLAST)

001: MADAAKGTYR ASRWSLNGMT ALVTGGTRGI GHAIVEDLCG FGATVHTCSR NQAELDKCLT EWRSKGFLVS GSVCDVSSQP HREKFIQEVT SIFNGKLNIY
101: VNNVGVNYRK PTIEYTAEVY SQIMAVNLDS AYHLCQLAYP LLKASGMGSI VFISSIAGVV SLGTGSVYAA CKAATNQLTK YLACEWAKDN IRSNCVVPAT
201: TNTPLVEHLL RNKKYVEEML SRTPLGRIAE PEEVSALVAY LCLPAASYIT GQVVLVDGGL SVNGFQTSMR IT

Best Arabidopsis Sequence Match ( AT5G06060.1 )
(BLAST)

001: METDKRWSLA GKTALVTGGT RGIGRAVVEE LAKFGAKVHT CSRNQEELNA CLNDWKANGL VVSGSVCDAS VRDQREKLIQ EASSAFSGKL NILINNVGTN
101: VRKPTVEYSS EEYAKIMSTN LESAFHLSQI AHPLLKASGV GSIVFISSVA GLVHLSSGSI YGATKGALNQ LTRNLACEWA SDNIRTNCVA PWYIKTSLVE
201: TLLEKKEFVE AVVSRTPLGR VGEPEEVSSL VAFLCLPASS YITGQVISVD GGFTVNGFSY AMKP

Arabidopsis Description

Tropinone reductase homolog At5g06060 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHT0]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.