CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

cytosol 1
peroxisome 4
plastid 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11511	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	78.97	78.04
KRH36525	Soybean	endoplasmic reticulum	78.57	77.65
Solyc04g014670.2.1	Tomato	plastid	77.78	77.47
CDY35231	Canola	peroxisome	38.1	77.42
CDX94534	Canola	peroxisome	75.4	74.51
PGSC0003DMT400034518	Potato	peroxisome	75.0	74.41
EER98384	Sorghum	peroxisome	74.6	74.31
Bra029476.1-P	Field mustard	peroxisome	75.0	74.12
CDY16690	Canola	peroxisome	75.0	74.12
AT4G05530.1	Thale cress	peroxisome	74.6	74.02
Zm00001d019439_P001	Maize	extracellular	74.21	73.91
Os09t0133200-01	Rice	peroxisome	74.21	73.91
HORVU0Hr1G012410.1	Barley	peroxisome	73.81	73.52
TraesCS5D01G169300.1	Wheat	peroxisome	73.41	73.12
TraesCS5A01G164400.1	Wheat	peroxisome	73.41	73.12
EES19901	Sorghum	peroxisome	72.62	72.33
TraesCS5B01G161900.1	Wheat	peroxisome	72.62	72.33
CDY27447	Canola	cytosol, mitochondrion, peroxisome	73.41	71.71
CDX76382	Canola	cytosol, mitochondrion, peroxisome	71.83	70.43
Bra020854.1-P	Field mustard	cytosol, mitochondrion, peroxisome	71.43	70.04
GSMUA_Achr3P01040_001	Banana	cytosol	25.79	67.71
KRH70902	Soybean	cytosol	29.37	67.27
Zm00001d038897_P001	Maize	peroxisome	70.24	63.44
GSMUA_Achr3P01030_001	Banana	mitochondrion	53.57	61.09
HORVU5Hr1G049670.1	Barley	peroxisome	54.76	54.55
KRH00026	Soybean	cytosol, mitochondrion, peroxisome	36.51	34.85
KRH00030	Soybean	cytosol	36.51	34.59
KRH49151	Soybean	mitochondrion	35.32	33.58
KRH49153	Soybean	cytosol	35.32	33.46
KRH00029	Soybean	peroxisome	12.7	32.65
KRH24731	Soybean	nucleus	34.52	32.58
KRH31026	Soybean	cytosol, mitochondrion, peroxisome, plastid	34.52	31.99
KRH49156	Soybean	plastid	21.43	31.58
KRH24732	Soybean	cytosol, endoplasmic reticulum, plastid	33.33	31.23
KRH24733	Soybean	nucleus	32.54	30.94
KRH31007	Soybean	mitochondrion	32.54	30.26
KRH49152	Soybean	cytosol	34.13	29.15
KRG97856	Soybean	mitochondrion, plastid	31.35	29.04
KRH31025	Soybean	plastid	31.35	28.52
KRH24734	Soybean	extracellular, plasma membrane, vacuole	12.7	28.07
KRH00032	Soybean	cytosol, peroxisome, plastid	19.44	27.22
KRG97870	Soybean	mitochondrion	26.59	26.8
KRH29741	Soybean	plastid	31.35	25.73
KRG97857	Soybean	mitochondrion	25.4	25.6
KRG96884	Soybean	cytosol	28.97	24.75
KRH31021	Soybean	mitochondrion	29.37	24.42
KRH68572	Soybean	cytosol	28.57	24.0
KRH13054	Soybean	nucleus	28.17	23.83
KRH44885	Soybean	nucleus	27.78	23.49
KRH68573	Soybean	cytosol	25.4	23.27
KRH68615	Soybean	cytosol, nucleus, plastid	20.24	23.08
KRG92837	Soybean	endoplasmic reticulum, nucleus	26.19	22.53
KRH33956	Soybean	endoplasmic reticulum	26.19	22.53
KRH51046	Soybean	cytosol, peroxisome, plastid	28.17	22.26
KRH29740	Soybean	cytosol	8.33	21.43

Protein Annotations

EntrezGene:100170726	Gene3D:3.40.50.720	MapMan:35.1	EMBL:AB331960	EMBL:ACUP02010293	UniProt:B0M195
EnsemblPlantsGene:GLYMA_17G009400	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491
GO:GO:0055114	EnsemblPlants:KRH02005	ProteinID:KRH02005	ProteinID:KRH02005.1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF13561
PRINTS:PR00080	PRINTS:PR00081	ScanProsite:PS00061	PANTHER:PTHR43943	PANTHER:PTHR43943:SF2	InterPro:SDR_fam
SUPFAM:SSF51735	InterPro:Sc_DH/Rdtase_CS	UniParc:UPI000165BB50	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr17:-:762031..763777

Molecular Weight (calculated)

26341.0 Da

IEP (calculated)

9.107

GRAVY (calculated)

0.177

Length

252 amino acids

Sequence
(BLAST)

001: METPKRFEGK VAIVTASTQG IGLAIAERLG LEGASVVISS RKQQNVDAAA EQLRAKGIQV LGVVCHVSSA QQRKNLIDKT VQKYGKIDVV VSNAAANPSV
101: DAILQTKDSV LDKLWEINVK ATILLLKDAV PHLQKGSSVV IISSIAGFNP PPSLAMYGVT KTALLGLTKA LAAEMAPNTR VNCVAPGFVP TNFASFITSN
201: DAVKKELEEK TLLGRLGTTE DMGAAAAFLA SDDAAYITGE TIVVAGGTPS RL

Best Arabidopsis Sequence Match ( AT4G05530.1 )
(BLAST)

001: MEKKLPRRLE GKVAIVTAST QGIGFGITER FGLEGASVVV SSRKQANVDE AVAKLKSKGI DAYGIVCHVS NAQHRRNLVE KTVQKYGKID IVVCNAAANP
101: STDPILSSKE AVLDKLWEIN VKSSILLLQD MAPHLEKGSS VIFITSIAGF SPQGAMAMYG VTKTALLGLT KALAAEMAPD TRVNAVAPGF VPTHFASFIT
201: GSSEVREGIE EKTLLNRLGT TGDMAAAAAF LASDDSSYIT GETLVVAGGM PSRL

Arabidopsis Description

SDRAShort-chain dehydrogenase/reductase SDRA [Source:UniProtKB/Swiss-Prot;Acc:Q9S9W2]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.