Factsheet for Bra029476.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
peroxisome 5
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35231	Canola	peroxisome	48.63	100.0
CDY16690	Canola	peroxisome	99.61	99.61
CDX94534	Canola	peroxisome	98.82	98.82
AT4G05530.1	Thale cress	peroxisome	94.12	94.49
Bra020854.1-P	Field mustard	cytosol, mitochondrion, peroxisome	84.31	83.66
KRH02005	Soybean	endoplasmic reticulum, nucleus	74.12	75.0
Solyc04g014670.2.1	Tomato	plastid	72.94	73.52
Zm00001d019439_P001	Maize	extracellular	70.98	71.54
EER98384	Sorghum	peroxisome	70.59	71.15
PGSC0003DMT400034518	Potato	peroxisome	69.8	70.08
EES19901	Sorghum	peroxisome	69.41	69.96
KRH36525	Soybean	endoplasmic reticulum	69.8	69.8
KRH11511	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	69.8	69.8
GSMUA_Achr3P01040_001	Banana	cytosol	25.88	68.75
TraesCS5A01G164400.1	Wheat	peroxisome	67.84	68.38
TraesCS5D01G169300.1	Wheat	peroxisome	67.84	68.38
HORVU0Hr1G012410.1	Barley	peroxisome	67.45	67.98
TraesCS5B01G161900.1	Wheat	peroxisome	66.67	67.19
Os09t0133200-01	Rice	peroxisome	65.49	66.01
GSMUA_Achr3P01030_001	Banana	mitochondrion	56.47	65.16
Zm00001d038897_P001	Maize	peroxisome	68.24	62.37
KRH70902	Soybean	cytosol	23.92	55.45
HORVU5Hr1G049670.1	Barley	peroxisome	50.2	50.59
Bra028744.1-P	Field mustard	cytosol	34.51	33.46
Bra009159.1-P	Field mustard	cytosol, mitochondrion, peroxisome, plasma membrane	33.33	32.44
Bra018400.1-P	Field mustard	cytosol, nucleus, plastid	32.94	32.06
Bra039755.1-P	Field mustard	mitochondrion	32.55	31.2
Bra039969.1-P	Field mustard	cytosol	32.16	31.18
Bra031575.1-P	Field mustard	plastid	31.76	30.92
Bra027962.1-P	Field mustard	cytosol	20.78	30.64
Bra018391.1-P	Field mustard	cytosol	31.37	30.53
Bra015580.1-P	Field mustard	mitochondrion	31.76	30.45
Bra039976.1-P	Field mustard	cytosol	32.16	30.26
Bra039513.1-P	Field mustard	peroxisome	30.98	30.15
Bra039971.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	30.98	30.15
Bra018404.1-P	Field mustard	cytosol	21.96	30.11
Bra039967.1-P	Field mustard	plastid	30.59	29.77
Bra039973.1-P	Field mustard	plastid	30.59	29.77
Bra039514.1-P	Field mustard	cytosol, peroxisome, plastid	30.59	29.77
Bra018393.1-P	Field mustard	cytosol	30.59	29.77
Bra030683.1-P	Field mustard	cytosol, mitochondrion, plastid	30.59	29.77
Bra039974.1-P	Field mustard	cytosol, plasma membrane, plastid	30.59	29.66
Bra018401.1-P	Field mustard	cytosol	29.41	29.64
Bra000476.1-P	Field mustard	cytosol, peroxisome, plastid	30.2	29.39
Bra000477.1-P	Field mustard	plastid	30.2	29.39
Bra018399.1-P	Field mustard	cytosol, peroxisome, plastid	30.2	29.39
Bra018405.1-P	Field mustard	cytosol	30.2	29.39
Bra018402.1-P	Field mustard	cytosol	25.1	29.22
Bra039977.1-P	Field mustard	plastid	21.96	29.02
Bra018396.1-P	Field mustard	cytosol	29.8	29.01
Bra039966.1-P	Field mustard	cytosol	30.59	27.08
Bra021324.1-P	Field mustard	cytosol	28.24	24.91
Bra001471.1-P	Field mustard	peroxisome	29.02	24.83
Bra034728.1-P	Field mustard	cytosol	28.24	24.49
Bra027961.1-P	Field mustard	cytosol	29.02	24.42
Bra029705.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	13.73	21.47
VIT_00s0516g00030.t01	Wine grape	cytosol, peroxisome	71.76	17.78

Protein Annotations

Gene3D:3.40.50.720	MapMan:35.1	EnsemblPlantsGene:Bra029476	EnsemblPlants:Bra029476.1	EnsemblPlants:Bra029476.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005777
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009653	GO:GO:0009719	GO:GO:0009987
GO:GO:0016049	GO:GO:0016491	GO:GO:0030154	GO:GO:0040007	GO:GO:0048767	GO:GO:0055114
GO:GO:0080024	GO:GO:0080026	UniProt:M4EL09	InterPro:NAD(P)-bd_dom_sf	PFAM:PF13561	PRINTS:PR00080
PRINTS:PR00081	ScanProsite:PS00061	PANTHER:PTHR43943	PANTHER:PTHR43943:SF2	InterPro:SDR_fam	SUPFAM:SSF51735
InterPro:Sc_DH/Rdtase_CS	UniParc:UPI0002542717	SEG:seg	:	:	:

Description

AT4G05530 (E=3e-113) IBR1, SDRA | IBR1 (INDOLE-3-BUTYRIC ACID RESPONSE 1); binding / catalytic/ oxidoreductase

Coordinates

chrA09:+:17718589..17719919

Molecular Weight (calculated)

27066.8 Da

IEP (calculated)

8.218

GRAVY (calculated)

0.065

Length

255 amino acids

Sequence
(BLAST)

001: MEGKKIGRRL EGKVAIVTAS TQGIGFGIIE RFGLEGASVV VSSRKQANVE EAVEKLKSKG IDAYGIVCHV SNAQHRRNLV EKTVQKYGKI DILVCNAAAN
101: PSTDPILSTK EAVLDKLWEI NVKSSILLLQ DMAPHLEKGS SVIFITSIAG FQPQGSMAMY GVTKTALLGL TKALAAEMGP DTRVNAVAPG FVPTHFASFI
201: TENSQVRESI EEKTLLNRLG TTGDMAAAAA FLASDDSSYI TGETLVVAGG MPSRL

Best Arabidopsis Sequence Match ( AT4G05530.1 )
(BLAST)

001: MEKKLPRRLE GKVAIVTAST QGIGFGITER FGLEGASVVV SSRKQANVDE AVAKLKSKGI DAYGIVCHVS NAQHRRNLVE KTVQKYGKID IVVCNAAANP
101: STDPILSSKE AVLDKLWEIN VKSSILLLQD MAPHLEKGSS VIFITSIAGF SPQGAMAMYG VTKTALLGLT KALAAEMAPD TRVNAVAPGF VPTHFASFIT
201: GSSEVREGIE EKTLLNRLGT TGDMAAAAAF LASDDSSYIT GETLVVAGGM PSRL

Arabidopsis Description

SDRAShort-chain dehydrogenase/reductase SDRA [Source:UniProtKB/Swiss-Prot;Acc:Q9S9W2]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.