Factsheet for VIT_00s0516g00030.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, peroxisome

Predictor Summary:

nucleus 2
mitochondrion 2
peroxisome 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P01040_001	Banana	cytosol	6.8	72.92
CDX94534	Canola	peroxisome	17.88	72.16
Bra029476.1-P	Field mustard	peroxisome	17.78	71.76
CDY16690	Canola	peroxisome	17.78	71.76
Solyc04g014670.2.1	Tomato	plastid	17.59	71.54
AT4G05530.1	Thale cress	peroxisome	17.4	70.47
CDY27447	Canola	cytosol, mitochondrion, peroxisome	17.49	69.77
CDX76382	Canola	cytosol, mitochondrion, peroxisome	17.4	69.65
Bra020854.1-P	Field mustard	cytosol, mitochondrion, peroxisome	17.3	69.26
PGSC0003DMT400034518	Potato	peroxisome	16.81	68.11
CDY35231	Canola	peroxisome	7.97	66.13
Zm00001d019439_P001	Maize	extracellular	16.23	66.01
EER98384	Sorghum	peroxisome	16.04	65.22
Os09t0133200-01	Rice	peroxisome	16.04	65.22
EES19901	Sorghum	peroxisome	15.94	64.82
TraesCS5A01G164400.1	Wheat	peroxisome	15.94	64.82
HORVU0Hr1G012410.1	Barley	peroxisome	15.84	64.43
TraesCS5D01G169300.1	Wheat	peroxisome	15.84	64.43
TraesCS5B01G161900.1	Wheat	peroxisome	15.55	63.24
GSMUA_Achr3P01030_001	Banana	mitochondrion	12.83	59.73
KRH70902	Soybean	cytosol	6.32	59.09
Zm00001d038897_P001	Maize	peroxisome	15.55	57.35
HORVU5Hr1G049670.1	Barley	peroxisome	13.12	53.36
VIT_06s0004g05440.t01	Wine grape	cytosol	2.82	35.37
VIT_06s0004g05400.t01	Wine grape	cytosol	3.69	34.23
VIT_06s0004g05310.t01	Wine grape	cytosol	3.69	33.63
VIT_06s0004g05320.t01	Wine grape	endoplasmic reticulum, peroxisome, plastid	7.39	30.16
VIT_06s0004g05380.t01	Wine grape	plastid	7.77	29.63
VIT_06s0004g05430.t01	Wine grape	mitochondrion, nucleus, peroxisome	7.48	28.52
VIT_06s0004g05330.t01	Wine grape	peroxisome	7.0	28.35
VIT_06s0004g05370.t01	Wine grape	peroxisome	6.9	28.17
VIT_06s0004g05280.t01	Wine grape	cytosol, nucleus, peroxisome	6.9	28.17
VIT_08s0007g00900.t01	Wine grape	mitochondrion, plastid	7.0	27.48
VIT_13s0019g02140.t01	Wine grape	peroxisome	7.09	26.94
VIT_13s0019g02180.t01	Wine grape	peroxisome, plasma membrane, plastid	7.0	26.87
VIT_08s0007g00890.t01	Wine grape	peroxisome	6.41	26.4
VIT_08s0007g00920.t01	Wine grape	peroxisome	6.71	25.84
VIT_13s0019g02130.t01	Wine grape	peroxisome	6.71	25.75
VIT_19s0085g00500.t01	Wine grape	peroxisome	7.19	24.92
VIT_06s0004g05450.t01	Wine grape	plasma membrane	4.28	24.44
VIT_13s0019g02170.t01	Wine grape	mitochondrion, nucleus, peroxisome, plastid	6.61	23.86
VIT_06s0004g05360.t01	Wine grape	cytosol, mitochondrion, plastid	5.44	23.33
VIT_01s0011g01520.t01	Wine grape	peroxisome	6.51	22.56
VIT_06s0004g05390.t01	Wine grape	cytosol, plasma membrane, plastid	5.25	21.95
VIT_17s0000g08740.t01	Wine grape	cytosol	2.62	21.95
VIT_14s0128g00340.t01	Wine grape	plastid	6.22	18.77

Protein Annotations

Gene3D:3.40.50.720	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	InterPro:NAD(P)-bd_dom_sf	PFAM:PF13561	PRINTS:PR00081	ScanProsite:PS00061
PANTHER:PTHR43943	PANTHER:PTHR43943:SF2	InterPro:SDR_fam	SUPFAM:SSF51735	InterPro:Sc_DH/Rdtase_CS	UniParc:UPI00023E40B0
ArrayExpress:VIT_00s0516g00030	EnsemblPlantsGene:VIT_00s0516g00030	EnsemblPlants:VIT_00s0516g00030.t01	SEG:seg	:	:

Description

indole-3-butyric acid response 1 [Source:TAIR;Acc:AT4G05530](projected from arabidopsis_thaliana,AT4G05530)

Coordinates

chrUn:+:31061059..31067943

Molecular Weight (calculated)

32866.7 Da

IEP (calculated)

9.463

GRAVY (calculated)

-0.070

Length

1029 amino acids

Sequence
(BLAST)

0001: MEKIGKRFQG KVAIVTASTQ GIGFSIAERL GLEGASVVLS SRKQNNVDEA VKKLKAQGIE AMGVVCHVSN AQHRKNLIEK TVQKYGAIDV VVSNAAANPS
0101: VDPILETRES VLDKLWEINV KSSILILQEA APHLRKGSSV VLISSIAGYQ PQSSMSMYGV TKTALLGLTK ALAAEMGPDT RVNCVAPGFV PTYFAEFLTK
0201: NAEIKKDIED KTLLNRLGTT KDMAAATAXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
0301: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
0401: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
0501: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
0601: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
0701: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
0801: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
0901: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXQH EQFIELTSEC LEPHEKKRCL GFADFPHQPL YSYNSVDMYT
1001: HLGAERTGSY KSRWLQRHGT GRFLMDRPR

Best Arabidopsis Sequence Match ( AT4G05530.1 )
(BLAST)

001: MEKKLPRRLE GKVAIVTAST QGIGFGITER FGLEGASVVV SSRKQANVDE AVAKLKSKGI DAYGIVCHVS NAQHRRNLVE KTVQKYGKID IVVCNAAANP
101: STDPILSSKE AVLDKLWEIN VKSSILLLQD MAPHLEKGSS VIFITSIAGF SPQGAMAMYG VTKTALLGLT KALAAEMAPD TRVNAVAPGF VPTHFASFIT
201: GSSEVREGIE EKTLLNRLGT TGDMAAAAAF LASDDSSYIT GETLVVAGGM PSRL

Arabidopsis Description

SDRAShort-chain dehydrogenase/reductase SDRA [Source:UniProtKB/Swiss-Prot;Acc:Q9S9W2]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.