Factsheet for VIT_17s0000g08740.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
peroxisome 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400056868	Potato	cytosol, peroxisome, plastid	73.17	52.63
VIT_01s0011g01520.t01	Wine grape	peroxisome	94.31	39.06
Os04t0614000-01	Rice	cytosol	79.67	32.78
VIT_19s0085g00500.t01	Wine grape	peroxisome	78.86	32.66
EES11417	Sorghum	peroxisome	78.05	32.32
EES11416	Sorghum	mitochondrion, peroxisome, plastid	78.05	32.32
Zm00001d002332_P026	Maize	peroxisome	78.05	32.32
Zm00001d026290_P001	Maize	peroxisome	77.24	31.88
TraesCS2D01G418900.1	Wheat	peroxisome	75.61	31.1
HORVU2Hr1G098920.1	Barley	peroxisome	75.61	31.1
TraesCS2A01G422500.1	Wheat	golgi, peroxisome	75.61	31.1
TraesCS2B01G441000.1	Wheat	peroxisome	75.61	31.1
VIT_06s0004g05450.t01	Wine grape	plasma membrane	19.51	13.33
VIT_13s0019g02140.t01	Wine grape	peroxisome	28.46	12.92
VIT_13s0019g02130.t01	Wine grape	peroxisome	26.83	12.31
VIT_08s0007g00900.t01	Wine grape	mitochondrion, plastid	24.39	11.45
VIT_06s0004g05370.t01	Wine grape	peroxisome	22.76	11.11
VIT_08s0007g00920.t01	Wine grape	peroxisome	23.58	10.86
VIT_13s0019g02180.t01	Wine grape	peroxisome, plasma membrane, plastid	23.58	10.82
VIT_08s0007g00890.t01	Wine grape	peroxisome	21.95	10.8
VIT_13s0019g02170.t01	Wine grape	mitochondrion, nucleus, peroxisome, plastid	24.39	10.53
VIT_06s0004g05320.t01	Wine grape	endoplasmic reticulum, peroxisome, plastid	21.14	10.32
VIT_06s0004g05280.t01	Wine grape	cytosol, nucleus, peroxisome	21.14	10.32
VIT_14s0128g00340.t01	Wine grape	plastid	28.46	10.26
VIT_06s0004g05330.t01	Wine grape	peroxisome	21.14	10.24
VIT_06s0004g05430.t01	Wine grape	mitochondrion, nucleus, peroxisome	21.14	9.63
VIT_06s0004g05380.t01	Wine grape	plastid	19.51	8.89
VIT_06s0004g05390.t01	Wine grape	cytosol, plasma membrane, plastid	15.45	7.72
VIT_06s0004g05360.t01	Wine grape	cytosol, mitochondrion, plastid	12.2	6.25
VIT_00s0516g00030.t01	Wine grape	cytosol, peroxisome	21.95	2.62
VIT_06s0004g05440.t01	Wine grape	cytosol	0.0	0.0
VIT_06s0004g05400.t01	Wine grape	cytosol	0.0	0.0
VIT_06s0004g05310.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

EntrezGene:100248476	wikigene:100248476	Gene3D:3.40.50.720	MapMan:35.1	ProteinID:CCB42965	ProteinID:CCB42965.1
UniProt:F6GSL8	EMBL:FN594950	EntrezGene:LOC100248476	wikigene:LOC100248476	InterPro:NAD(P)-bd_dom_sf	PFAM:PF13561
PRINTS:PR00081	PANTHER:PTHR43296	PANTHER:PTHR43296:SF1	InterPro:SDR_fam	SUPFAM:SSF51735	UniParc:UPI00015C8D20
ArrayExpress:VIT_17s0000g08740	EnsemblPlantsGene:VIT_17s0000g08740	EnsemblPlants:VIT_17s0000g08740.t01	RefSeq:XP_002278740	RefSeq:XP_002278740.2	RefSeq:XP_010663838.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr17:-:10087930..10088418

Molecular Weight (calculated)

13426.3 Da

IEP (calculated)

8.999

GRAVY (calculated)

-0.089

Length

123 amino acids

Sequence
(BLAST)

001: MCHEALKYLK KGGPGKSPST GGIIINISAT LHYTATWYQI HVSATKAVVD SITRSLALEW GTDYDIRVNG IAPGPIDDTA GLSKLAPEDV VRKAKEHEPL
101: FKLREKWDIV MAAVYLASKS LSM

Best Arabidopsis Sequence Match ( AT3G12800.1 )
(BLAST)

001: MDSPFKPDVV RGQVALITGG GSGIGFEISS QFGKHGASIA IMGRRKQVLD DAVSALRSLG IQAIGLEGDV RKQEDARRVV EATFQHFGKL DILVNAAAGN
101: FLAAAEDLSP NGFRTVLDID AVGTFNMCHA ALKYLKKGAP GRDSSSGGGS IINISATLHY TASWYQIHVS AAKAAVDATT RNLALEWGTD YDIRVNGIAP
201: GPIGGTPGMS KLVPEEIENK TREYMPLYKV GEKWDIAMAA LYLSCDSGKY VSGLTMVVDG GLWLSKPRHL PKEAVKQLSR AVEKRSRAKP VGLPTSKL

Arabidopsis Description

SDRBUncharacterized protein At3g12790 [Source:UniProtKB/TrEMBL;Acc:Q0WMN4]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.