Factsheet for VIT_08s0007g00890.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

mitochondrion 2
cytosol 2
peroxisome 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g05310.t01	Wine grape	cytosol	30.8	68.14
VIT_06s0004g05400.t01	Wine grape	cytosol	30.0	67.57
VIT_06s0004g05440.t01	Wine grape	cytosol	22.0	67.07
VIT_06s0004g05320.t01	Wine grape	endoplasmic reticulum, peroxisome, plastid	66.4	65.87
VIT_08s0007g00900.t01	Wine grape	mitochondrion, plastid	68.0	64.89
VIT_06s0004g05370.t01	Wine grape	peroxisome	64.0	63.49
VIT_08s0007g00920.t01	Wine grape	peroxisome	66.8	62.55
VIT_06s0004g05280.t01	Wine grape	cytosol, nucleus, peroxisome	62.8	62.3
VIT_06s0004g05380.t01	Wine grape	plastid	66.8	61.85
VIT_06s0004g05330.t01	Wine grape	peroxisome	62.8	61.81
VIT_13s0019g02180.t01	Wine grape	peroxisome, plasma membrane, plastid	65.2	60.82
VIT_06s0004g05430.t01	Wine grape	mitochondrion, nucleus, peroxisome	63.6	58.89
Solyc10g086620.1.1	Tomato	plastid	62.0	56.78
PGSC0003DMT400049413	Potato	endoplasmic reticulum, peroxisome, plastid	63.2	56.63
VIT_13s0019g02130.t01	Wine grape	peroxisome	60.4	56.34
VIT_13s0019g02140.t01	Wine grape	peroxisome	60.4	55.72
VIT_06s0004g05360.t01	Wine grape	cytosol, mitochondrion, plastid	52.4	54.58
VIT_06s0004g05390.t01	Wine grape	cytosol, plasma membrane, plastid	50.8	51.63
VIT_06s0004g05450.t01	Wine grape	plasma membrane	36.8	51.11
VIT_13s0019g02170.t01	Wine grape	mitochondrion, nucleus, peroxisome, plastid	56.4	49.47
VIT_19s0085g00500.t01	Wine grape	peroxisome	26.4	22.22
VIT_14s0128g00340.t01	Wine grape	plastid	30.0	21.99
VIT_17s0000g08740.t01	Wine grape	cytosol	10.8	21.95
VIT_01s0011g01520.t01	Wine grape	peroxisome	25.6	21.55
VIT_00s0516g00030.t01	Wine grape	cytosol, peroxisome	26.4	6.41

Protein Annotations

EntrezGene:100258048	wikigene:100258048	Gene3D:3.40.50.720	MapMan:50.1.1	EMBL:AM457106	ProteinID:CAN74482
ProteinID:CAN74482.1	ProteinID:CBI30509	ProteinID:CBI30509.3	UniProt:D7THJ3	EMBL:FN595991	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	EntrezGene:LOC100258048
wikigene:LOC100258048	InterPro:NAD(P)-bd_dom_sf	PFAM:PF13561	PRINTS:PR00080	PRINTS:PR00081	ScanProsite:PS00061
PANTHER:PTHR42898	PANTHER:PTHR42898:SF13	InterPro:SDR_fam	SUPFAM:SSF51735	InterPro:Sc_DH/Rdtase_CS	UniParc:UPI0001BE35D6
ArrayExpress:VIT_08s0007g00890	EnsemblPlantsGene:VIT_08s0007g00890	EnsemblPlants:VIT_08s0007g00890.t01	RefSeq:XP_002271363	RefSeq:XP_002271363.2	:

Description

No Description!

Coordinates

chr8:+:15057256..15059210

Molecular Weight (calculated)

26918.3 Da

IEP (calculated)

6.656

GRAVY (calculated)

0.075

Length

250 amino acids

Sequence
(BLAST)

001: MTALITGGTR GIGYAIVEEL AELGAIVHTC SRNQTELNER LQEWEGKGFR VSGSVCDLTS RAQREKLTET VSSLFEGKLN ILVNNAATVA LKAPTNYTAE
101: DCSSILQTNF ESPYHLCQLA HPLLKASGRG SIIFISSVAG LISLPHMSVY AATKGAINQV TKNLACEWAK DNIRTNAVAP WTVRTSVRPI LEPDNPMATA
201: YPQLLARTPL HRIAEPDEVS PLVAFLCLPA ASYITGQVIC VDGGFSVNGF

Best Arabidopsis Sequence Match ( AT2G29150.1 )
(BLAST)

001: MAKAGENSRD KSRWSLEGMT ALVTGGSKGL GEAVVEELAM LGARVHTCAR DETQLQERLR EWQAKGFEVT TSVCDVSSRE QREKLMETVS SVFQGKLNIL
101: VNNAGTGIIK PSTEYTAEDY SFLMATNLES AFHLSQIAHP LLKASGSGSI VFMSSVAGLV HTGASIYGAS KGAMNQLGRS LACEWASDNI RVNSVCPWVI
201: TTPLTSFIFS DEKLRKAVED KTPMGRVGEA NEVSSLVAFL CFPAASYITG QTICVDGGAS VNGFSFKP

Arabidopsis Description

Tropinone reductase homolog At2g29150 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZW03]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.