Factsheet for VIT_01s0011g01520.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
peroxisome 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, peroxisome
BaCelLo:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	peroxisome
PProwler:	peroxisome
PTS1:	peroxisome
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g08740.t01	Wine grape	cytosol	39.06	94.31
VIT_19s0085g00500.t01	Wine grape	peroxisome	82.49	82.49
KRH44885	Soybean	nucleus	78.11	77.85
GSMUA_Achr2P01480_001	Banana	peroxisome	77.78	77.78
Solyc07g066630.2.1	Tomato	plastid	77.78	77.26
KRH13054	Soybean	nucleus	77.44	77.18
CDX73802	Canola	peroxisome	76.77	76.51
CDY00799	Canola	peroxisome	76.09	75.84
GSMUA_Achr3P23590_001	Banana	peroxisome	75.76	75.76
Bra001471.1-P	Field mustard	peroxisome	75.76	75.5
AT3G12800.1	Thale cress	peroxisome	75.42	75.17
Bra034728.1-P	Field mustard	cytosol	73.4	74.15
CDY08402	Canola	cytosol	73.4	74.15
VIT_06s0004g05400.t01	Wine grape	cytosol	11.45	30.63
VIT_06s0004g05310.t01	Wine grape	cytosol	11.45	30.09
VIT_06s0004g05440.t01	Wine grape	cytosol	8.08	29.27
VIT_06s0004g05320.t01	Wine grape	endoplasmic reticulum, peroxisome, plastid	23.91	28.17
VIT_13s0019g02140.t01	Wine grape	peroxisome	25.59	28.04
VIT_13s0019g02130.t01	Wine grape	peroxisome	25.25	27.99
VIT_08s0007g00900.t01	Wine grape	mitochondrion, plastid	23.91	27.1
VIT_06s0004g05430.t01	Wine grape	mitochondrion, nucleus, peroxisome	24.58	27.04
VIT_06s0004g05280.t01	Wine grape	cytosol, nucleus, peroxisome	22.9	26.98
VIT_08s0007g00920.t01	Wine grape	peroxisome	24.24	26.97
VIT_06s0004g05380.t01	Wine grape	plastid	24.24	26.67
VIT_13s0019g02180.t01	Wine grape	peroxisome, plasma membrane, plastid	23.91	26.49
VIT_06s0004g05370.t01	Wine grape	peroxisome	22.22	26.19
VIT_08s0007g00890.t01	Wine grape	peroxisome	21.55	25.6
VIT_06s0004g05330.t01	Wine grape	peroxisome	21.21	24.8
VIT_14s0128g00340.t01	Wine grape	plastid	26.6	23.17
VIT_13s0019g02170.t01	Wine grape	mitochondrion, nucleus, peroxisome, plastid	22.22	23.16
VIT_06s0004g05450.t01	Wine grape	plasma membrane	13.8	22.78
VIT_06s0004g05360.t01	Wine grape	cytosol, mitochondrion, plastid	18.18	22.5
VIT_06s0004g05390.t01	Wine grape	cytosol, plasma membrane, plastid	17.17	20.73
VIT_00s0516g00030.t01	Wine grape	cytosol, peroxisome	22.56	6.51

Protein Annotations

EntrezGene:100257583	wikigene:100257583	Gene3D:3.40.50.720	MapMan:5.7.3.5.3	UniProt:A5AHN8	EMBL:AM427005
ProteinID:CAN73418	ProteinID:CAN73418.1	ProteinID:CBI27193	ProteinID:CBI27193.3	EMBL:FN595752	EntrezGene:LOC100257583
wikigene:LOC100257583	InterPro:NAD(P)-bd_dom_sf	PFAM:PF13561	PRINTS:PR00080	PRINTS:PR00081	PANTHER:PTHR43296
PANTHER:PTHR43296:SF1	InterPro:SDR_fam	SUPFAM:SSF51735	TIGR:TC56205	UniParc:UPI000151E913	ArrayExpress:VIT_01s0011g01520
EnsemblPlantsGene:VIT_01s0011g01520	EnsemblPlants:VIT_01s0011g01520.t01	unigene:Vvi.2581	RefSeq:XP_002275982	RefSeq:XP_002275982.1	SEG:seg

Description

No Description!

Coordinates

chr1:+:1336774..1340483

Molecular Weight (calculated)

31786.5 Da

IEP (calculated)

9.991

GRAVY (calculated)

-0.070

Length

297 amino acids

Sequence
(BLAST)

001: MESPFRGDIL KGKVALLTGG GSGIGYEISR QLGKHGASIA IMGRRRQVLD AAVSSLHSLG IPAIGLEGDV RKQEDAVRVL ESTIKHFGRL DILVNAAAGN
101: FLVPAEDLSP KGFQTVIDID SVGTFTMCHE ALQYLKKGGP GKSPSTGGII INISATLHYT ATWYQIHVSA AKAAVDSITR SLALEWGTDY DIRVNGIAPG
201: PIDDTAGLSK LAPEDVVRKA KEHEPLFKLG EKWDIAMAAV YLASNAGKYI NGTTLTVDGG LWLSKPRHLS KEAVKQLSRA VERRSRKILV GVPKSKL

Best Arabidopsis Sequence Match ( AT3G12800.1 )
(BLAST)

001: MDSPFKPDVV RGQVALITGG GSGIGFEISS QFGKHGASIA IMGRRKQVLD DAVSALRSLG IQAIGLEGDV RKQEDARRVV EATFQHFGKL DILVNAAAGN
101: FLAAAEDLSP NGFRTVLDID AVGTFNMCHA ALKYLKKGAP GRDSSSGGGS IINISATLHY TASWYQIHVS AAKAAVDATT RNLALEWGTD YDIRVNGIAP
201: GPIGGTPGMS KLVPEEIENK TREYMPLYKV GEKWDIAMAA LYLSCDSGKY VSGLTMVVDG GLWLSKPRHL PKEAVKQLSR AVEKRSRAKP VGLPTSKL

Arabidopsis Description

SDRBUncharacterized protein At3g12790 [Source:UniProtKB/TrEMBL;Acc:Q0WMN4]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.