Factsheet for Solyc07g066630.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
peroxisome 5
plastid 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400056868	Potato	cytosol, peroxisome, plastid	56.52	98.83
VIT_19s0085g00500.t01	Wine grape	peroxisome	85.62	86.2
KRH13054	Soybean	nucleus	80.27	80.54
KRH44885	Soybean	nucleus	80.27	80.54
CDX73802	Canola	peroxisome	78.6	78.86
GSMUA_Achr2P01480_001	Banana	peroxisome	77.93	78.45
GSMUA_Achr3P23590_001	Banana	peroxisome	77.93	78.45
Bra001471.1-P	Field mustard	peroxisome	77.93	78.19
AT3G12800.1	Thale cress	peroxisome	77.59	77.85
VIT_01s0011g01520.t01	Wine grape	peroxisome	77.26	77.78
Bra034728.1-P	Field mustard	cytosol	76.25	77.55
CDY08402	Canola	cytosol	76.25	77.55
CDY00799	Canola	peroxisome	76.92	77.18
Os04t0614000-01	Rice	cytosol	72.91	72.91
Zm00001d026290_P001	Maize	peroxisome	72.58	72.82
EES11416	Sorghum	mitochondrion, peroxisome, plastid	72.24	72.73
EES11417	Sorghum	peroxisome	71.24	71.72
TraesCS2D01G418900.1	Wheat	peroxisome	70.9	70.9
TraesCS2B01G441000.1	Wheat	peroxisome	70.9	70.9
HORVU2Hr1G098920.1	Barley	peroxisome	70.57	70.57
Zm00001d002332_P026	Maize	peroxisome	69.9	70.37
TraesCS2A01G422500.1	Wheat	golgi, peroxisome	70.23	70.23
Solyc03g096650.1.1	Tomato	cytosol	9.03	30.34
Solyc06g083480.2.1	Tomato	cytosol	12.71	29.46
Solyc04g014670.2.1	Tomato	plastid	24.75	29.25
Solyc06g083490.2.1	Tomato	cytosol, peroxisome, plastid	17.73	28.65
Solyc03g096640.2.1	Tomato	mitochondrion, plastid	24.75	27.61
Solyc04g007400.2.1	Tomato	cytosol	24.08	27.59
Solyc04g054950.2.1	Tomato	mitochondrion, peroxisome, plastid	24.08	27.38
Solyc06g083470.2.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	24.41	27.14
Solyc10g086620.1.1	Tomato	plastid	23.75	26.01
Solyc09g011140.2.1	Tomato	cytosol	23.41	25.93
Solyc09g011130.1.1	Tomato	plastid	22.07	25.1
Solyc06g005720.2.1	Tomato	plastid	25.08	24.92
Solyc10g081560.1.1	Tomato	cytosol, nucleus, peroxisome	21.74	24.62
Solyc03g096660.1.1	Tomato	extracellular	16.05	24.62
Solyc01g098850.2.1	Tomato	extracellular	27.09	23.82

Protein Annotations

EnsemblPlants:Solyc07g066630.2.1	EnsemblPlantsGene:Solyc07g066630.2	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam	PANTHER:PTHR43296
PANTHER:PTHR43296:SF1	PFAM:PF13561	PRINTS:PR00080	PRINTS:PR00081	SEG:seg	SMART:SM00822
SUPFAM:SSF51735	UniParc:UPI000276B67C	UniProt:K4CHY6	MapMan:5.7.3.5.3	:	:

Description

No Description!

Coordinates

chr7:-:67992875..67996026

Molecular Weight (calculated)

31848.5 Da

IEP (calculated)

9.657

GRAVY (calculated)

-0.089

Length

299 amino acids

Sequence
(BLAST)

001: MECASPFKSD ILKGKVALLT GGGSGIGLEI STQFGKHGAS VAIMGRRKAV LDSAVSYLQS FGIPAIGLQG DVRKQEDAKR VVELTVKQFG KLDILVNAAA
101: GNFLVSPEDL SPNGFRTVLD IDSVGTFTMC HEALNYIKKG GPGRSSTSGG MILNISATLH YTASWYQIHV AAAKAAVDAV TRNLALEWGT DYDIRVNGIA
201: PGPIGDTAGM RKLGPEEISN KSKEYMPLYK LGEKYDIAMA ALYLASDAGK YINGTIVPVD GGLWLSRPRH LPKDAVKELS RTVEKKSRNA PVGVPPSKL

Best Arabidopsis Sequence Match ( AT3G12800.1 )
(BLAST)

001: MDSPFKPDVV RGQVALITGG GSGIGFEISS QFGKHGASIA IMGRRKQVLD DAVSALRSLG IQAIGLEGDV RKQEDARRVV EATFQHFGKL DILVNAAAGN
101: FLAAAEDLSP NGFRTVLDID AVGTFNMCHA ALKYLKKGAP GRDSSSGGGS IINISATLHY TASWYQIHVS AAKAAVDATT RNLALEWGTD YDIRVNGIAP
201: GPIGGTPGMS KLVPEEIENK TREYMPLYKV GEKWDIAMAA LYLSCDSGKY VSGLTMVVDG GLWLSKPRHL PKEAVKQLSR AVEKRSRAKP VGLPTSKL

Arabidopsis Description

SDRBUncharacterized protein At3g12790 [Source:UniProtKB/TrEMBL;Acc:Q0WMN4]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.