Subcellular Localization
min:
: max
Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, mitochondrion, plastid, cytosol, plasma membrane, golgi
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- cytosol 2
- mitochondrion 3
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g083480.2.1 | Tomato | cytosol | 36.8 | 76.74 |
| Solyc06g083490.2.1 | Tomato | cytosol, peroxisome, plastid | 52.42 | 76.22 |
| Solyc03g096640.2.1 | Tomato | mitochondrion, plastid | 66.54 | 66.79 |
| Solyc03g096650.1.1 | Tomato | cytosol | 19.7 | 59.55 |
| Solyc03g096660.1.1 | Tomato | extracellular | 41.26 | 56.92 |
| Solyc09g011140.2.1 | Tomato | cytosol | 53.16 | 52.96 |
| Solyc09g011130.1.1 | Tomato | plastid | 51.3 | 52.47 |
| Solyc04g054950.2.1 | Tomato | mitochondrion, peroxisome, plastid | 48.7 | 49.81 |
| Solyc10g081560.1.1 | Tomato | cytosol, nucleus, peroxisome | 48.33 | 49.24 |
| Solyc06g005720.2.1 | Tomato | plastid | 55.02 | 49.17 |
| Solyc10g086620.1.1 | Tomato | plastid | 49.07 | 48.35 |
| Solyc04g007400.2.1 | Tomato | cytosol | 46.84 | 48.28 |
| Solyc04g014670.2.1 | Tomato | plastid | 26.02 | 27.67 |
| Solyc07g066630.2.1 | Tomato | plastid | 27.14 | 24.41 |
| Solyc01g098850.2.1 | Tomato | extracellular | 29.37 | 23.24 |
Protein Annotations
| EnsemblPlants:Solyc06g083470.2.1 | EnsemblPlantsGene:Solyc06g083470.2 | Gene3D:3.40.50.720 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016491 | GO:GO:0055114 | InterPro:NAD(P)-bd_dom_sf | InterPro:SDR_fam | InterPro:Sc_DH/Rdtase_CS |
| PANTHER:PTHR42898 | PANTHER:PTHR42898:SF3 | PFAM:PF13561 | PRINTS:PR00080 | PRINTS:PR00081 | ScanProsite:PS00061 |
| SUPFAM:SSF51735 | UniParc:UPI0002765DE9 | UniProt:K4CAK2 | MapMan:50.1.1 | : | : |
Description
No Description!
Coordinates
chr6:-:48868037..48869823
Molecular Weight (calculated)
28807.4 Da
IEP (calculated)
6.387
GRAVY (calculated)
0.048
Length
269 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKVAAFAKS CRWSLDGLAA LVTGGTSGIG HAVVEELAGL GAKVYTCCKT ESELDEPMQD WAERGIQVKG SACDVTCRDQ RVELMKKVSS EFDGKLNILI
101: NNVGTNIWKH SIDYNAEDYA HMMATNLESS FHFSQLAHPL LKSSGSGSIV FTASVAGLVH VSGTSIYGAT KAGMIQLTRN LACEWGRDGI RVNAVAPCYT
201: NTPLVKHLLK DKEFSDALIS RVPLGRSGEV EEVSSLIAYL CLPGASYVTG QIIAVDGGFT VYGFQQPGY
101: NNVGTNIWKH SIDYNAEDYA HMMATNLESS FHFSQLAHPL LKSSGSGSIV FTASVAGLVH VSGTSIYGAT KAGMIQLTRN LACEWGRDGI RVNAVAPCYT
201: NTPLVKHLLK DKEFSDALIS RVPLGRSGEV EEVSSLIAYL CLPGASYVTG QIIAVDGGFT VYGFQQPGY
001: METDKRWSLA GKTALVTGGT RGIGRAVVEE LAKFGAKVHT CSRNQEELNA CLNDWKANGL VVSGSVCDAS VRDQREKLIQ EASSAFSGKL NILINNVGTN
101: VRKPTVEYSS EEYAKIMSTN LESAFHLSQI AHPLLKASGV GSIVFISSVA GLVHLSSGSI YGATKGALNQ LTRNLACEWA SDNIRTNCVA PWYIKTSLVE
201: TLLEKKEFVE AVVSRTPLGR VGEPEEVSSL VAFLCLPASS YITGQVISVD GGFTVNGFSY AMKP
101: VRKPTVEYSS EEYAKIMSTN LESAFHLSQI AHPLLKASGV GSIVFISSVA GLVHLSSGSI YGATKGALNQ LTRNLACEWA SDNIRTNCVA PWYIKTSLVE
201: TLLEKKEFVE AVVSRTPLGR VGEPEEVSSL VAFLCLPASS YITGQVISVD GGFTVNGFSY AMKP
Arabidopsis Description
Tropinone reductase homolog At5g06060 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHT0]
SUBAcon: [peroxisome]
SUBAcon: [peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.