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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • cytosol 2
  • plastid 8
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:cytosol
ChloroP:plastid
EpiLoc:cytosol
iPSORT:plastid
MultiLoc:plastid
Plant-mPloc:plastid
Predotar:plastid
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
VIT_06s0004g05280.t01 Wine grape cytosol, nucleus, peroxisome 66.78 79.76
KRH24734 Soybean extracellular, plasma membrane, vacuole 29.57 78.07
KRH29741 Soybean plastid 69.1 67.75
Solyc03g096640.2.1 Tomato mitochondrion, plastid 57.14 64.18
Solyc06g083480.2.1 Tomato cytosol 27.24 63.57
Solyc03g096650.1.1 Tomato cytosol 18.6 62.92
Solyc06g083490.2.1 Tomato cytosol, peroxisome, plastid 38.54 62.7
Solyc03g096660.1.1 Tomato extracellular 37.54 57.95
Solyc09g011130.1.1 Tomato plastid 48.84 55.89
Solyc06g083470.2.1 Tomato cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole 49.17 55.02
Solyc04g054950.2.1 Tomato mitochondrion, peroxisome, plastid 46.84 53.61
Solyc10g081560.1.1 Tomato cytosol, nucleus, peroxisome 46.51 53.03
Solyc09g011140.2.1 Tomato cytosol 46.51 51.85
Solyc10g086620.1.1 Tomato plastid 46.84 51.65
Solyc04g007400.2.1 Tomato cytosol 44.19 50.96
Solyc04g014670.2.1 Tomato plastid 25.91 30.83
Solyc07g066630.2.1 Tomato plastid 24.92 25.08
Solyc01g098850.2.1 Tomato extracellular 25.58 22.65
AT1G36580.1 Thale cress nucleus 13.29 20.51
Protein Annotations
EnsemblPlants:Solyc06g005720.2.1EnsemblPlantsGene:Solyc06g005720.2Gene3D:3.40.50.720InterPro:NAD(P)-bd_dom_sfInterPro:SDR_famPANTHER:PTHR42898
PANTHER:PTHR42898:SF2PFAM:PF13561PRINTS:PR00080PRINTS:PR00081SEG:segSUPFAM:SSF51735
UniParc:UPI0002765D2AUniProt:K4C354MapMan:50.1.1:::
Description
No Description!
Coordinates
chr6:+:766800..773885
Molecular Weight (calculated)
33023.6 Da
IEP (calculated)
6.973
GRAVY (calculated)
-0.001
Length
301 amino acids
Sequence
(BLAST)
001: MWESVLVLQV PSPSVKFKFQ IPKPRNWSWM NKYSSIRCAG KVNRWSLDGM NALVTGGTRG IGHAIVEELC GLGATVHTCA RNEDELEICL RSWKDEGFTV
101: SGSLCDVSSQ VDRQKLMEVV SSTFNGKLDI LINNVGTNIR KAMVDFTAEE FSSVMATNFE SVFHLCQLAY PLLKASGAGS VVFTSSVSGF VSLKSMSLQG
201: ATKGAINQLT KYLACEWAKD NIRSNAVAPW YIKTSMVEQV LSNKEYLQEV YDRTPLGRLG EPSEVSSLVG FLCLPASSYI TGQIICVDGG MSVNGFYPHH
301: D
Best Arabidopsis Sequence Match ( AT2G29260.1 )
(BLAST)
001: MVLDMASHLY TNPPQNLHFI SSSSSLKPHL CLSFKRINPK HKSSSSSVFV PYASQSSIAI TSKERWSLNG MSALVTGGTR GIGRAIVEEL AGLGAEVHTC
101: ARNEYELENC LSDWNRSGFR VAGSVCDVSD RSQREALMET VSSVFEGKLH ILVNNVGTNI RKPMVEFTAG EFSTLMSTNF ESVFHLCQLA YPLLRESKAG
201: SVVFISSVSG FVSLKNMSVQ SSTKGAINQL TRSLACEWAK DNIRINAVAP WYIKTSMVEQ VLSNKEYLEE VYSVTPLGRL GEPREVSSAV AFLCLPASSY
301: ITGQILCVDG GMSINGFFPR HD
Arabidopsis Description
Tropinone reductase homolog At2g29260, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZW12]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.