Factsheet for Solyc04g054950.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, plastid

Predictor Summary:

cytosol 2
mitochondrion 3
plastid 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400053141	Potato	mitochondrion, peroxisome, plastid	98.1	98.1
KRH00029	Soybean	peroxisome	22.43	60.2
Solyc03g096650.1.1	Tomato	cytosol	19.77	58.43
VIT_08s0007g00900.t01	Wine grape	mitochondrion, plastid	58.17	58.4
Solyc09g011140.2.1	Tomato	cytosol	59.7	58.15
Solyc09g011130.1.1	Tomato	plastid	57.79	57.79
VIT_08s0007g00920.t01	Wine grape	peroxisome	58.56	57.68
KRH00026	Soybean	cytosol, mitochondrion, peroxisome	55.89	55.68
Solyc10g081560.1.1	Tomato	cytosol, nucleus, peroxisome	55.13	54.92
Solyc04g007400.2.1	Tomato	cytosol	54.37	54.79
Solyc03g096640.2.1	Tomato	mitochondrion, plastid	55.13	54.1
KRH49151	Soybean	mitochondrion	54.37	53.96
KRH00030	Soybean	cytosol	53.99	53.38
Solyc10g086620.1.1	Tomato	plastid	54.75	52.75
Solyc06g083490.2.1	Tomato	cytosol, peroxisome, plastid	36.88	52.43
KRH49153	Soybean	cytosol	51.71	51.13
KRH49156	Soybean	plastid	32.32	49.71
Solyc06g083480.2.1	Tomato	cytosol	23.95	48.84
Solyc03g096660.1.1	Tomato	extracellular	36.12	48.72
Solyc06g083470.2.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	49.81	48.7
KRH49152	Soybean	cytosol	52.85	47.12
Solyc06g005720.2.1	Tomato	plastid	53.61	46.84
KRH00032	Soybean	cytosol, peroxisome, plastid	27.38	40.0
Solyc04g014670.2.1	Tomato	plastid	32.32	33.6
Solyc07g066630.2.1	Tomato	plastid	27.38	24.08
Solyc01g098850.2.1	Tomato	extracellular	29.66	22.94

Protein Annotations

Gene3D:3.40.50.720	MapMan:50.1.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008150
GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0055114	UniProt:K4BSP3
InterPro:NAD(P)-bd_dom_sf	PFAM:PF13561	PRINTS:PR00080	PRINTS:PR00081	ScanProsite:PS00061	PANTHER:PTHR42898
PANTHER:PTHR42898:SF15	InterPro:SDR_fam	SUPFAM:SSF51735	InterPro:Sc_DH/Rdtase_CS	EnsemblPlantsGene:Solyc04g054950.2	EnsemblPlants:Solyc04g054950.2.1
TMHMM:TMhelix	UniParc:UPI0002765A4C	:	:	:	:

Description

No Description!

Coordinates

chr4:-:53482981..53484375

Molecular Weight (calculated)

28354.1 Da

IEP (calculated)

5.099

GRAVY (calculated)

0.087

Length

263 amino acids

Sequence
(BLAST)

001: MAQIGDGRWS LHGMTALVTG GTRGIGYAIV EELASFGASI YTCSRNKKDL DECLEKWQTK GYKVNGSTCD LFLEDQRIEL IGKATQHFNG ELDILVNNAA
101: ICVPKETTQI TSADCSLMMG TNFEASYNLC QLAYPFLKGS GKASVVFISS ISGIMAIPFV SLYAATKGAI NQLTKNLACE WGKDNIRVNA VAPWIIDTAL
201: TDTVAEDFES SDVEKLIKRT PISRMGKPNE VSSLVAYLCF PAAAYITGQI ICVDGGKTVS GFP

Best Arabidopsis Sequence Match ( AT1G07440.1 )
(BLAST)

001: MAGAEQSQRW SLKAKTVLVT GGTKGIGHAI VEEFAGFGAV IHTCARNEYE LNECLSKWQK KGFQVTGSVC DASLRPEREK LMQTVSSMFG GKLDILINNL
101: GAIRSKPTLD YTAEDFSFHI STNLESAYHL SQLAHPLLKA SGCGNIIFMS SIAGVVSASV GSIYSATKGA LNQLARNLAC EWASDGIRAN AVAPAVIATP
201: LAEAVYDDEF KKVVISRKPL GRFGEPEEVS SLVAFLCMPA ASYITGQTIC VDGGLTVNGF SYQPQG

Arabidopsis Description

Tropinone reductase homolog At1g07440 [Source:UniProtKB/Swiss-Prot;Acc:P0DKI3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.