Factsheet for Solyc03g096640.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, mitochondrion

Predictor Summary:

plastid 4
cytosol 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g096650.1.1
Solyc06g075780.1.1
Solyc11g073060.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06060.1	Solyc03g096650.1.1	AT2G29330.1	21798944
AT5G06060.1	Solyc03g096650.1.1	AT2G29360.1	21798944
AT5G06060.1	Solyc06g075780.1.1	AT3G46090.1	17259181
AT5G06060.1	Solyc11g073060.1.1	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400043159	Potato	mitochondrion	95.9	95.54
Solyc06g083490.2.1	Tomato	cytosol, peroxisome, plastid	52.99	76.76
Solyc03g096650.1.1	Tomato	cytosol	25.37	76.4
Solyc06g083480.2.1	Tomato	cytosol	36.57	75.97
Solyc03g096660.1.1	Tomato	extracellular	54.48	74.87
AT5G06060.1	Thale cress	peroxisome	72.01	73.11
VIT_13s0019g02180.t01	Wine grape	peroxisome, plasma membrane, plastid	71.64	71.64
CDY04977	Canola	peroxisome	70.15	71.48
CDY14094	Canola	peroxisome	70.15	71.48
CDX98899	Canola	peroxisome	69.78	71.37
GSMUA_Achr10P...	Banana	cytosol	72.01	71.22
Bra028744.1-P	Field mustard	cytosol	69.4	70.72
CDX70101	Canola	peroxisome	67.54	69.08
Bra009159.1-P	Field mustard	cytosol, mitochondrion, peroxisome, plasma membrane	67.16	68.7
HORVU4Hr1G060350.3	Barley	plastid	69.4	68.38
TraesCS4B01G210000.1	Wheat	plastid	69.03	68.01
CDY04975	Canola	mitochondrion	28.36	67.86
Os03t0268900-02	Rice	plastid	68.28	67.78
TraesCS4A01G094400.1	Wheat	plastid	68.66	67.65
TraesCS4D01G210800.1	Wheat	plastid	68.28	67.28
TraesCS4B01G209900.1	Wheat	peroxisome	67.54	67.04
KRH31007	Soybean	mitochondrion	67.54	66.79
Solyc06g083470.2.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	66.79	66.54
TraesCS4A01G094500.1	Wheat	cytosol, peroxisome, plastid	66.79	66.05
Zm00001d028575_P001	Maize	extracellular	67.16	65.93
Os03t0269000-01	Rice	plastid	51.49	64.79
VIT_13s0019g02130.t01	Wine grape	peroxisome	63.81	63.81
KRG97856	Soybean	mitochondrion, plastid	64.18	63.24
VIT_13s0019g02140.t01	Wine grape	peroxisome	63.06	62.36
KRH31026	Soybean	cytosol, mitochondrion, peroxisome, plastid	62.69	61.76
KRG97870	Soybean	mitochondrion	56.72	60.8
KRH31025	Soybean	plastid	62.69	60.65
VIT_13s0019g02170.t01	Wine grape	mitochondrion, nucleus, peroxisome, plastid	64.18	60.35
Solyc09g011130.1.1	Tomato	plastid	58.58	59.7
Os03t0269100-02	Rice	mitochondrion, plastid	66.42	57.79
Solyc09g011140.2.1	Tomato	cytosol	58.21	57.78
TraesCS4D01G210700.1	Wheat	plastid	67.91	57.41
Solyc06g005720.2.1	Tomato	plastid	64.18	57.14
OQU92858	Sorghum	cytosol, peroxisome, plastid	65.3	56.82
EES08074	Sorghum	plastid	63.81	56.81
Solyc04g007400.2.1	Tomato	cytosol	54.85	56.32
Solyc10g081560.1.1	Tomato	cytosol, nucleus, peroxisome	55.22	56.06
KRG97857	Soybean	mitochondrion	52.24	56.0
Solyc04g054950.2.1	Tomato	mitochondrion, peroxisome, plastid	54.1	55.13
Solyc10g086620.1.1	Tomato	plastid	55.22	54.21
CDX98898	Canola	cytosol, peroxisome, plasma membrane	62.31	53.87
KRH31021	Soybean	mitochondrion	60.45	53.47
HORVU4Hr1G060330.1	Barley	mitochondrion	63.43	53.12
OQU91956	Sorghum	extracellular, peroxisome	52.24	43.75
Solyc04g014670.2.1	Tomato	plastid	29.85	31.62
Solyc07g066630.2.1	Tomato	plastid	27.61	24.75
Solyc01g098850.2.1	Tomato	extracellular	29.85	23.53

Protein Annotations

Gene3D:3.40.50.720	MapMan:50.1.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0055114	UniProt:K4BJ82	InterPro:NAD(P)-bd_dom_sf	PFAM:PF13561	PRINTS:PR00080
PRINTS:PR00081	ScanProsite:PS00061	PANTHER:PTHR42898	PANTHER:PTHR42898:SF3	InterPro:SDR_fam	SUPFAM:SSF51735
InterPro:Sc_DH/Rdtase_CS	EnsemblPlantsGene:Solyc03g096640.2	EnsemblPlants:Solyc03g096640.2.1	UniParc:UPI0002767DE0	:	:

Description

No Description!

Coordinates

chr3:-:58889730..58892960

Molecular Weight (calculated)

28745.2 Da

IEP (calculated)

6.779

GRAVY (calculated)

-0.002

Length

268 amino acids

Sequence
(BLAST)

001: MSTAKAAGSS RWSLSGFTAL VTGGTRGIGH AVVEELAELG ATVYTCSRNE AELNERLQEW AVKGLQVKGS VCDASSREQR IQLMENVSAA FDGKLNILIN
101: NVGTNIRKPT TDYTAEEYAH LFSTNLESAY HLCQLAHPLL KASGNGSVVF ISSVAGLVHL SSGSIYGATK GAINQLTRNL ACEWAKDNIR VNGVAPWYIK
201: TSLVEHLLEN KTFLDGVISR TPLRRPGESQ EVSSLVAYLC LPGASYITGQ VIAVDGGFTV NGFEMPSF

Best Arabidopsis Sequence Match ( AT5G06060.1 )
(BLAST)

001: METDKRWSLA GKTALVTGGT RGIGRAVVEE LAKFGAKVHT CSRNQEELNA CLNDWKANGL VVSGSVCDAS VRDQREKLIQ EASSAFSGKL NILINNVGTN
101: VRKPTVEYSS EEYAKIMSTN LESAFHLSQI AHPLLKASGV GSIVFISSVA GLVHLSSGSI YGATKGALNQ LTRNLACEWA SDNIRTNCVA PWYIKTSLVE
201: TLLEKKEFVE AVVSRTPLGR VGEPEEVSSL VAFLCLPASS YITGQVISVD GGFTVNGFSY AMKP

Arabidopsis Description

Tropinone reductase homolog At5g06060 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHT0]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.