Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- peroxisome 1
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G209900.1 | Wheat | peroxisome | 95.2 | 95.56 |
| TraesCS4D01G210700.1 | Wheat | plastid | 96.68 | 82.65 |
| TraesCS4A01G094400.1 | Wheat | plastid | 77.49 | 77.21 |
| HORVU4Hr1G060330.1 | Barley | mitochondrion | 87.45 | 74.06 |
| GSMUA_Achr10P... | Banana | cytosol | 70.85 | 70.85 |
| Os03t0269100-02 | Rice | mitochondrion, plastid | 80.44 | 70.78 |
| AT5G06060.1 | Thale cress | peroxisome | 67.53 | 69.32 |
| VIT_13s0019g02180.t01 | Wine grape | peroxisome, plasma membrane, plastid | 68.27 | 69.03 |
| CDY14094 | Canola | peroxisome | 66.79 | 68.82 |
| CDY04977 | Canola | peroxisome | 65.68 | 67.68 |
| Bra028744.1-P | Field mustard | cytosol | 64.94 | 66.92 |
| Solyc03g096640.2.1 | Tomato | mitochondrion, plastid | 66.05 | 66.79 |
| PGSC0003DMT400043159 | Potato | mitochondrion | 66.05 | 66.54 |
| CDX98899 | Canola | peroxisome | 64.21 | 66.41 |
| CDY04975 | Canola | mitochondrion | 26.57 | 64.29 |
| EES08074 | Sorghum | plastid | 70.48 | 63.46 |
| CDX70101 | Canola | peroxisome | 60.89 | 62.98 |
| Bra009159.1-P | Field mustard | cytosol, mitochondrion, peroxisome, plasma membrane | 60.52 | 62.6 |
| KRH31007 | Soybean | mitochondrion | 61.99 | 61.99 |
| VIT_13s0019g02130.t01 | Wine grape | peroxisome | 61.25 | 61.94 |
| VIT_13s0019g02140.t01 | Wine grape | peroxisome | 61.62 | 61.62 |
| KRG97856 | Soybean | mitochondrion, plastid | 60.89 | 60.66 |
| KRH31025 | Soybean | plastid | 60.52 | 59.21 |
| KRG97870 | Soybean | mitochondrion | 54.61 | 59.2 |
| Solyc03g096660.1.1 | Tomato | extracellular | 42.07 | 58.46 |
| PGSC0003DMT400043152 | Potato | peroxisome | 59.41 | 58.12 |
| KRH31026 | Soybean | cytosol, mitochondrion, peroxisome, plastid | 58.3 | 58.09 |
| VIT_13s0019g02170.t01 | Wine grape | mitochondrion, nucleus, peroxisome, plastid | 59.78 | 56.84 |
| TraesCS1A01G383700.1 | Wheat | cytosol, extracellular, plastid | 31.73 | 56.58 |
| KRG97857 | Soybean | mitochondrion | 51.29 | 55.6 |
| TraesCS3A01G401900.1 | Wheat | extracellular, mitochondrion, plastid | 52.4 | 53.99 |
| TraesCS2A01G369400.1 | Wheat | cytosol, mitochondrion, peroxisome, plastid | 53.14 | 53.93 |
| KRH31021 | Soybean | mitochondrion | 60.15 | 53.8 |
| TraesCS1A01G390900.1 | Wheat | mitochondrion, plastid | 51.29 | 53.67 |
| TraesCS5A01G029700.1 | Wheat | plastid | 52.03 | 53.61 |
| TraesCS2A01G497100.1 | Wheat | golgi, peroxisome, plastid | 51.29 | 52.85 |
| TraesCS3A01G448300.1 | Wheat | peroxisome, plastid | 50.92 | 50.37 |
| TraesCS3A01G402000.1 | Wheat | mitochondrion, plastid | 48.71 | 50.19 |
| TraesCS4A01G343100.1 | Wheat | cytosol, peroxisome, plastid | 33.58 | 50.0 |
| TraesCS4A01G179900.1 | Wheat | peroxisome | 50.55 | 49.64 |
| TraesCS4A01G328000.1 | Wheat | cytosol, peroxisome, plastid | 47.6 | 49.05 |
| CDX98898 | Canola | cytosol, peroxisome, plasma membrane | 56.09 | 49.03 |
| TraesCS1A01G390800.1 | Wheat | mitochondrion, plastid | 50.18 | 48.57 |
| TraesCS4A01G342900.1 | Wheat | cytosol, peroxisome, plastid | 16.24 | 44.0 |
| TraesCS4A01G327900.1 | Wheat | mitochondrion, plastid | 50.55 | 42.55 |
| TraesCS5A01G164400.1 | Wheat | peroxisome | 30.63 | 32.81 |
| TraesCS2A01G422500.1 | Wheat | golgi, peroxisome | 25.46 | 23.08 |
| TraesCS1A01G083800.1 | Wheat | plastid | 27.68 | 21.61 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G094500.1 | EnsemblPlantsGene:TraesCS4A01G094500 | Gene3D:3.40.50.720 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016491 | InterPro:NAD(P)-bd_dom_sf | InterPro:SDR_fam | InterPro:Sc_DH/Rdtase_CS | PANTHER:PTHR42898 |
| PANTHER:PTHR42898:SF14 | PFAM:PF13561 | PRINTS:PR00080 | PRINTS:PR00081 | ScanProsite:PS00061 | SEG:seg |
| SMART:SM00822 | SUPFAM:SSF51735 | TMHMM:TMhelix | MapMan:50.1.1 | : | : |
Description
No Description!
Coordinates
chr4A:-:102636422..102640073
Molecular Weight (calculated)
29202.9 Da
IEP (calculated)
6.512
GRAVY (calculated)
-0.012
Length
271 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAVDDIIGS SAGRWSLHGR TALVTGGTRG IGRSVVEELA ALGAAVHTCS RKEAELGERL KEWEARGFRV TGSVCDVSVR DQRELLLHTV AGRFAGKLDI
101: LINNVGTNHR KPTTEYSADE YSFIMATNLE SAYHLCQLAH PLLKASGVAS IVFISSVSGV VAISSGSIYA MTKGAMNQLA KNLACEWAKD NIRINSVAPW
201: YIKTSLVEED LAKEDFVDSI ARRTPMRRVG EPEEVSSLVA FLCMPGSSYI TGQTISVDGG MTINGMYPTE N
101: LINNVGTNHR KPTTEYSADE YSFIMATNLE SAYHLCQLAH PLLKASGVAS IVFISSVSGV VAISSGSIYA MTKGAMNQLA KNLACEWAKD NIRINSVAPW
201: YIKTSLVEED LAKEDFVDSI ARRTPMRRVG EPEEVSSLVA FLCMPGSSYI TGQTISVDGG MTINGMYPTE N
001: METDKRWSLA GKTALVTGGT RGIGRAVVEE LAKFGAKVHT CSRNQEELNA CLNDWKANGL VVSGSVCDAS VRDQREKLIQ EASSAFSGKL NILINNVGTN
101: VRKPTVEYSS EEYAKIMSTN LESAFHLSQI AHPLLKASGV GSIVFISSVA GLVHLSSGSI YGATKGALNQ LTRNLACEWA SDNIRTNCVA PWYIKTSLVE
201: TLLEKKEFVE AVVSRTPLGR VGEPEEVSSL VAFLCLPASS YITGQVISVD GGFTVNGFSY AMKP
101: VRKPTVEYSS EEYAKIMSTN LESAFHLSQI AHPLLKASGV GSIVFISSVA GLVHLSSGSI YGATKGALNQ LTRNLACEWA SDNIRTNCVA PWYIKTSLVE
201: TLLEKKEFVE AVVSRTPLGR VGEPEEVSSL VAFLCLPASS YITGQVISVD GGFTVNGFSY AMKP
Arabidopsis Description
Tropinone reductase homolog At5g06060 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHT0]
SUBAcon: [peroxisome]
SUBAcon: [peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.