Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G342900.1 | Wheat | cytosol, peroxisome, plastid | 46.15 | 84.0 |
| TraesCS5B01G531800.1 | Wheat | cytosol, peroxisome, plastid | 92.31 | 65.88 |
| TraesCS5B01G531600.1 | Wheat | mitochondrion | 89.01 | 62.31 |
| TraesCS5D01G530100.1 | Wheat | peroxisome | 87.91 | 61.54 |
| TraesCS2A01G497100.1 | Wheat | golgi, peroxisome, plastid | 80.22 | 55.51 |
| TraesCS4A01G328000.1 | Wheat | cytosol, peroxisome, plastid | 76.92 | 53.23 |
| TraesCS1A01G390900.1 | Wheat | mitochondrion, plastid | 65.93 | 46.33 |
| TraesCS3A01G401900.1 | Wheat | extracellular, mitochondrion, plastid | 64.29 | 44.49 |
| TraesCS4A01G327900.1 | Wheat | mitochondrion, plastid | 78.57 | 44.41 |
| TraesCS1A01G390800.1 | Wheat | mitochondrion, plastid | 67.58 | 43.93 |
| EES10195 | Sorghum | mitochondrion | 63.19 | 43.56 |
| KXG29038 | Sorghum | mitochondrion, plastid | 63.19 | 43.56 |
| EES10198 | Sorghum | mitochondrion, plastid | 63.74 | 42.8 |
| TraesCS2A01G369400.1 | Wheat | cytosol, mitochondrion, peroxisome, plastid | 62.64 | 42.7 |
| Zm00001d007687_P001 | Maize | extracellular | 61.54 | 42.59 |
| TraesCS3A01G402000.1 | Wheat | mitochondrion, plastid | 60.99 | 42.21 |
| KXG29040 | Sorghum | cytosol, peroxisome, plastid | 56.04 | 42.15 |
| TraesCS5A01G029700.1 | Wheat | plastid | 58.79 | 40.68 |
| CDY35991 | Canola | plastid | 26.37 | 38.71 |
| TraesCS3A01G448300.1 | Wheat | peroxisome, plastid | 56.04 | 37.23 |
| TraesCS4A01G179900.1 | Wheat | peroxisome | 56.04 | 36.96 |
| GSMUA_Achr9P03470_001 | Banana | cytosol | 53.3 | 36.06 |
| GSMUA_Achr11P... | Banana | cytosol | 50.55 | 34.33 |
| TraesCS4A01G094400.1 | Wheat | plastid | 50.55 | 33.82 |
| TraesCS4A01G094500.1 | Wheat | cytosol, peroxisome, plastid | 50.0 | 33.58 |
| GSMUA_Achr9P03430_001 | Banana | cytosol, mitochondrion, plastid | 47.8 | 33.21 |
| GSMUA_Achr9P03420_001 | Banana | mitochondrion | 52.75 | 31.89 |
| GSMUA_Achr9P03440_001 | Banana | cytosol | 46.7 | 31.37 |
| TraesCS1A01G383700.1 | Wheat | cytosol, extracellular, plastid | 25.27 | 30.26 |
| Zm00001d048726_P001 | Maize | cytosol | 36.81 | 29.91 |
| GSMUA_Achr5P04560_001 | Banana | cytosol | 53.85 | 28.41 |
| GSMUA_Achr6P34030_001 | Banana | cytosol | 51.1 | 25.69 |
| TraesCS5A01G164400.1 | Wheat | peroxisome | 32.97 | 23.72 |
| Bra029705.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 18.68 | 20.86 |
| GSMUA_Achr9P03450_001 | Banana | cytosol, nucleus, peroxisome | 52.2 | 20.17 |
| TraesCS2A01G422500.1 | Wheat | golgi, peroxisome | 28.57 | 17.39 |
| TraesCS1A01G083800.1 | Wheat | plastid | 32.97 | 17.29 |
| GSMUA_Achr10P... | Banana | cytosol | 47.8 | 16.14 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G343100.1 | EnsemblPlantsGene:TraesCS4A01G343100 | Gene3D:3.40.50.720 | InterPro:NAD(P)-bd_dom_sf | InterPro:SDR_fam | PANTHER:PTHR42898 |
| PANTHER:PTHR42898:SF1 | PFAM:PF13561 | PRINTS:PR00080 | PRINTS:PR00081 | SEG:seg | SUPFAM:SSF51735 |
| TMHMM:TMhelix | MapMan:50.1.1 | : | : | : | : |
Description
No Description!
Coordinates
chr4A:-:622509024..622510602
Molecular Weight (calculated)
19510.6 Da
IEP (calculated)
5.765
GRAVY (calculated)
0.098
Length
182 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTVRQTFDG KLDILVNNAG QLLVKPTAEC TVEEYSKVMA TNLESSFHLS QLARPLLVRA GGGSIINMSS IGGSIGFVGS TVYAITKDIM YVGAMNQLTR
101: SLATEWAPDK IRVNGVAPGF ITTDMIKDMD TEYLEQEHSK TPLRRSGKPA EIASTVAFLC MPAASFITGQ VICVDGGRTI SA
101: SLATEWAPDK IRVNGVAPGF ITTDMIKDMD TEYLEQEHSK TPLRRSGKPA EIASTVAFLC MPAASFITGQ VICVDGGRTI SA
001: MESSREAVVE ELSILGARVH TCARDETQLQ ERLREWQEKG FQVTTSICDV SLREQREKLM ETVSSLFQGK LNILVNNVGT LMLKPTTEYT AEEFSFLMAT
101: NLDSAFHISQ LAHPLLKASG SGSIVLMSSI AGVVHVGVGS IYGATKGAMN QLARNLACEW ASDNIRTNAI CPWLITTPLI SDLLSVEEMK KEAEERTPMG
201: RVGEANEVSP LVAFLCLPAA SYITGQVICV DGGLTVNGFS YQPHA
101: NLDSAFHISQ LAHPLLKASG SGSIVLMSSI AGVVHVGVGS IYGATKGAMN QLARNLACEW ASDNIRTNAI CPWLITTPLI SDLLSVEEMK KEAEERTPMG
201: RVGEANEVSP LVAFLCLPAA SYITGQVICV DGGLTVNGFS YQPHA
Arabidopsis Description
Tropinone reductase homolog At2g29290 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZW13]
SUBAcon: [peroxisome,golgi,plastid]
SUBAcon: [peroxisome,golgi,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.