Factsheet for VIT_13s0019g02130.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 3
peroxisome 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0004g05310.t01
VIT_06s0004g05320.t01
VIT_06s0004g05330.t01
VIT_06s0004g05360.t01
VIT_06s0004g05370.t01
VIT_06s0004g05380.t01
VIT_06s0004g05390.t01
VIT_06s0004g05400.t01
VIT_06s0004g05430.t01
VIT_06s0004g05440.t01
VIT_06s0004g05450.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06060.1	VIT_06s0004g05310.t01	AT2G29330.1	21798944
AT5G06060.1	VIT_06s0004g05320.t01	AT2G29330.1	21798944
AT5G06060.1	VIT_06s0004g05330.t01	AT2G29330.1	21798944
AT5G06060.1	VIT_06s0004g05360.t01	AT2G29330.1	21798944
AT5G06060.1	VIT_06s0004g05370.t01	AT2G29330.1	21798944
AT5G06060.1	VIT_06s0004g05380.t01	AT2G29330.1	21798944
AT5G06060.1	VIT_06s0004g05390.t01	AT2G29330.1	21798944
AT5G06060.1	VIT_06s0004g05400.t01	AT2G29330.1	21798944
AT5G06060.1	VIT_06s0004g05430.t01	AT2G29330.1	21798944
AT5G06060.1	VIT_06s0004g05440.t01	AT2G29330.1	21798944
AT5G06060.1	VIT_06s0004g05450.t01	AT2G29330.1	21798944
AT5G06060.1	VIT_06s0004g05310.t01	AT2G29360.1	21798944
AT5G06060.1	VIT_06s0004g05320.t01	AT2G29360.1	21798944
AT5G06060.1	VIT_06s0004g05330.t01	AT2G29360.1	21798944
AT5G06060.1	VIT_06s0004g05360.t01	AT2G29360.1	21798944
AT5G06060.1	VIT_06s0004g05370.t01	AT2G29360.1	21798944
AT5G06060.1	VIT_06s0004g05380.t01	AT2G29360.1	21798944
AT5G06060.1	VIT_06s0004g05390.t01	AT2G29360.1	21798944
AT5G06060.1	VIT_06s0004g05400.t01	AT2G29360.1	21798944
AT5G06060.1	VIT_06s0004g05430.t01	AT2G29360.1	21798944
AT5G06060.1	VIT_06s0004g05440.t01	AT2G29360.1	21798944
AT5G06060.1	VIT_06s0004g05450.t01	AT2G29360.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0019g02140.t01	Wine grape	peroxisome	88.43	87.45
VIT_13s0019g02180.t01	Wine grape	peroxisome, plasma membrane, plastid	72.76	72.76
VIT_06s0004g05440.t01	Wine grape	cytosol	21.27	69.51
VIT_06s0004g05380.t01	Wine grape	plastid	67.54	67.04
VIT_06s0004g05320.t01	Wine grape	endoplasmic reticulum, peroxisome, plastid	62.31	66.27
GSMUA_Achr10P...	Banana	cytosol	65.67	64.94
VIT_06s0004g05430.t01	Wine grape	mitochondrion, nucleus, peroxisome	65.3	64.81
AT5G06060.1	Thale cress	peroxisome	63.06	64.02
VIT_06s0004g05400.t01	Wine grape	cytosol	26.49	63.96
PGSC0003DMT400043159	Potato	mitochondrion	64.18	63.94
VIT_06s0004g05370.t01	Wine grape	peroxisome	60.07	63.89
Solyc03g096640.2.1	Tomato	mitochondrion, plastid	63.81	63.81
CDY04977	Canola	peroxisome	62.31	63.5
CDY14094	Canola	peroxisome	61.94	63.12
KRG97856	Soybean	mitochondrion, plastid	63.81	62.87
Bra028744.1-P	Field mustard	cytosol	61.57	62.74
CDX98899	Canola	peroxisome	61.19	62.6
HORVU4Hr1G060350.3	Barley	plastid	63.43	62.5
KRH31007	Soybean	mitochondrion	63.06	62.36
Os03t0268900-02	Rice	plastid	62.69	62.22
KRH31026	Soybean	cytosol, mitochondrion, peroxisome, plastid	63.06	62.13
VIT_06s0004g05310.t01	Wine grape	cytosol	26.12	61.95
VIT_08s0007g00900.t01	Wine grape	mitochondrion, plastid	60.45	61.83
TraesCS4A01G094400.1	Wheat	plastid	62.69	61.76
VIT_06s0004g05330.t01	Wine grape	peroxisome	58.21	61.42
TraesCS4D01G210800.1	Wheat	plastid	62.31	61.4
TraesCS4A01G094500.1	Wheat	cytosol, peroxisome, plastid	61.94	61.25
VIT_06s0004g05280.t01	Wine grape	cytosol, nucleus, peroxisome	57.46	61.11
TraesCS4B01G209900.1	Wheat	peroxisome	61.57	61.11
Bra009159.1-P	Field mustard	cytosol, mitochondrion, peroxisome, plasma membrane	59.7	61.07
CDX70101	Canola	peroxisome	59.7	61.07
TraesCS4B01G210000.1	Wheat	plastid	61.94	61.03
CDY04975	Canola	mitochondrion	25.37	60.71
VIT_06s0004g05360.t01	Wine grape	cytosol, mitochondrion, plastid	54.1	60.42
VIT_08s0007g00890.t01	Wine grape	peroxisome	56.34	60.4
KRH31025	Soybean	plastid	62.31	60.29
VIT_13s0019g02170.t01	Wine grape	mitochondrion, nucleus, peroxisome, plastid	63.81	60.0
Zm00001d028575_P001	Maize	extracellular	60.45	59.34
Os03t0269000-01	Rice	plastid	46.64	58.69
VIT_08s0007g00920.t01	Wine grape	peroxisome	57.84	58.05
KRG97870	Soybean	mitochondrion	54.1	58.0
PGSC0003DMT400043152	Potato	peroxisome	58.21	56.32
Solyc03g096660.1.1	Tomato	extracellular	40.67	55.9
EES08074	Sorghum	plastid	61.19	54.49
VIT_06s0004g05390.t01	Wine grape	cytosol, plasma membrane, plastid	50.0	54.47
Os03t0269100-02	Rice	mitochondrion, plastid	61.94	53.9
KRG97857	Soybean	mitochondrion	49.63	53.2
KRH31021	Soybean	mitochondrion	59.7	52.81
VIT_06s0004g05450.t01	Wine grape	plasma membrane	35.45	52.78
TraesCS4D01G210700.1	Wheat	plastid	62.31	52.68
OQU92858	Sorghum	cytosol, peroxisome, plastid	59.7	51.95
HORVU4Hr1G060330.1	Barley	mitochondrion	58.58	49.06
CDX98898	Canola	cytosol, peroxisome, plasma membrane	55.6	48.06
OQU91956	Sorghum	extracellular, peroxisome	48.51	40.62
VIT_17s0000g08740.t01	Wine grape	cytosol	12.31	26.83
VIT_01s0011g01520.t01	Wine grape	peroxisome	27.99	25.25
VIT_19s0085g00500.t01	Wine grape	peroxisome	26.87	24.24
VIT_14s0128g00340.t01	Wine grape	plastid	27.24	21.41
VIT_00s0516g00030.t01	Wine grape	cytosol, peroxisome	25.75	6.71

Protein Annotations

EntrezGene:100254687	wikigene:100254687	Gene3D:3.40.50.720	MapMan:50.1.1	ProteinID:CCB56318	ProteinID:CCB56318.1
UniProt:F6HNU8	EMBL:FN595998	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	EntrezGene:LOC100254687	wikigene:LOC100254687
InterPro:NAD(P)-bd_dom_sf	PFAM:PF13561	PRINTS:PR00080	PRINTS:PR00081	ScanProsite:PS00061	PANTHER:PTHR42898
PANTHER:PTHR42898:SF3	InterPro:SDR_fam	SUPFAM:SSF51735	InterPro:Sc_DH/Rdtase_CS	UniParc:UPI00015C975D	ArrayExpress:VIT_13s0019g02130
EnsemblPlantsGene:VIT_13s0019g02130	EnsemblPlants:VIT_13s0019g02130.t01	RefSeq:XP_002277859	RefSeq:XP_002277859.2	SEG:seg	:

Description

No Description!

Coordinates

chr13:+:3437346..3439106

Molecular Weight (calculated)

28221.7 Da

IEP (calculated)

7.659

GRAVY (calculated)

0.032

Length

268 amino acids

Sequence
(BLAST)

001: MAEAESNCSD SRWSLKGTTE LVTGGTLGIG YAIVEELAGM GATVHTCART ESKLNDRLRD WNAKGFDVRG SVCDVSDRAQ REQLTEKVSS GFNGKLNILI
101: NNVGTNFSKP TIGYTVADFS TLIATNIASA YHLSQLAHPL LKASGAGSIV FISSVAGVVS TGTGSIYAAT KAAMNQITKS LACEWAKDNI RSNCVAPFCI
201: RTPLIEHELA KKSKMEGVAS RTPLGCPGEP KEISSLVTFL CMPCASYITG QVISVDGGLT ANGFSPNI

Best Arabidopsis Sequence Match ( AT1G07440.1 )
(BLAST)

001: MAGAEQSQRW SLKAKTVLVT GGTKGIGHAI VEEFAGFGAV IHTCARNEYE LNECLSKWQK KGFQVTGSVC DASLRPEREK LMQTVSSMFG GKLDILINNL
101: GAIRSKPTLD YTAEDFSFHI STNLESAYHL SQLAHPLLKA SGCGNIIFMS SIAGVVSASV GSIYSATKGA LNQLARNLAC EWASDGIRAN AVAPAVIATP
201: LAEAVYDDEF KKVVISRKPL GRFGEPEEVS SLVAFLCMPA ASYITGQTIC VDGGLTVNGF SYQPQG

Arabidopsis Description

Tropinone reductase homolog At1g07440 [Source:UniProtKB/Swiss-Prot;Acc:P0DKI3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.