Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 2
- peroxisome 1
- plastid 3
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
VIT_06s0004g05310.t01 | Wine grape | cytosol | 40.74 | 97.35 |
VIT_06s0004g05320.t01 | Wine grape | endoplasmic reticulum, peroxisome, plastid | 90.37 | 96.83 |
VIT_06s0004g05400.t01 | Wine grape | cytosol | 39.63 | 96.4 |
VIT_06s0004g05330.t01 | Wine grape | peroxisome | 87.41 | 92.91 |
VIT_06s0004g05430.t01 | Wine grape | mitochondrion, nucleus, peroxisome | 92.59 | 92.59 |
VIT_06s0004g05440.t01 | Wine grape | cytosol | 27.04 | 89.02 |
VIT_06s0004g05450.t01 | Wine grape | plasma membrane | 52.96 | 79.44 |
VIT_06s0004g05370.t01 | Wine grape | peroxisome | 71.48 | 76.59 |
VIT_06s0004g05390.t01 | Wine grape | cytosol, plasma membrane, plastid | 68.52 | 75.2 |
VIT_06s0004g05360.t01 | Wine grape | cytosol, mitochondrion, plastid | 66.3 | 74.58 |
VIT_06s0004g05280.t01 | Wine grape | cytosol, nucleus, peroxisome | 65.93 | 70.63 |
VIT_13s0019g02180.t01 | Wine grape | peroxisome, plasma membrane, plastid | 69.63 | 70.15 |
Solyc03g096650.1.1 | Tomato | cytosol | 22.96 | 69.66 |
VIT_13s0019g02130.t01 | Wine grape | peroxisome | 67.04 | 67.54 |
AT2G29360.1 | Thale cress | cytosol | 67.78 | 67.53 |
VIT_08s0007g00890.t01 | Wine grape | peroxisome | 61.85 | 66.8 |
VIT_08s0007g00900.t01 | Wine grape | mitochondrion, plastid | 64.07 | 66.03 |
Bra030683.1-P | Field mustard | cytosol, mitochondrion, plastid | 63.7 | 65.65 |
CDX86486 | Canola | cytosol, peroxisome, plastid | 63.7 | 65.65 |
CDY64214 | Canola | mitochondrion | 41.48 | 65.5 |
AT2G29170.1 | Thale cress | cytosol | 25.93 | 65.42 |
Bra027962.1-P | Field mustard | cytosol | 41.85 | 65.32 |
VIT_13s0019g02140.t01 | Wine grape | peroxisome | 65.56 | 65.31 |
CDY68057 | Canola | cytosol | 63.33 | 65.27 |
CDY52942 | Canola | mitochondrion | 64.07 | 65.04 |
AT1G07450.1 | Thale cress | cytosol, nucleus, peroxisome | 62.59 | 65.0 |
AT2G29370.1 | Thale cress | peroxisome | 64.44 | 64.93 |
AT1G07440.1 | Thale cress | mitochondrion | 63.7 | 64.66 |
AT2G29290.2 | Thale cress | plastid | 62.59 | 64.5 |
KRH24731 | Soybean | nucleus | 63.7 | 64.42 |
AT2G29350.1 | Thale cress | plastid | 64.07 | 64.31 |
Bra015580.1-P | Field mustard | mitochondrion | 63.33 | 64.29 |
Bra039755.1-P | Field mustard | mitochondrion | 63.33 | 64.29 |
CDY06706 | Canola | mitochondrion | 63.33 | 64.29 |
CDY16437 | Canola | mitochondrion | 63.33 | 64.29 |
AT2G29150.1 | Thale cress | peroxisome | 63.7 | 64.18 |
CDX86485 | Canola | cytosol, peroxisome, plastid | 62.22 | 64.12 |
CDY09917 | Canola | cytosol | 62.22 | 64.12 |
Bra018391.1-P | Field mustard | cytosol | 61.85 | 63.74 |
Bra031575.1-P | Field mustard | plastid | 61.85 | 63.74 |
CDY45434 | Canola | cytosol, nucleus, plastid | 61.85 | 63.74 |
Bra018393.1-P | Field mustard | cytosol | 61.48 | 63.36 |
Bra018400.1-P | Field mustard | cytosol, nucleus, plastid | 61.48 | 63.36 |
CDY06260 | Canola | plastid | 61.48 | 63.36 |
CDY40175 | Canola | plasma membrane | 61.48 | 63.36 |
CDY72061 | Canola | cytosol | 25.56 | 63.3 |
CDY10276 | Canola | mitochondrion | 62.22 | 63.16 |
CDY14610 | Canola | mitochondrion | 62.22 | 63.16 |
AT2G30670.1 | Thale cress | cytosol, nucleus, peroxisome | 61.11 | 62.98 |
CDY40183 | Canola | plastid | 61.11 | 62.98 |
CDY40179 | Canola | cytosol, peroxisome, plastid | 60.74 | 62.84 |
Bra039969.1-P | Field mustard | cytosol | 61.11 | 62.74 |
CDY62820 | Canola | cytosol, endoplasmic reticulum, peroxisome | 61.11 | 62.74 |
CDX97893 | Canola | mitochondrion | 62.96 | 62.73 |
CDY09823 | Canola | peroxisome | 62.96 | 62.73 |
CDY09824 | Canola | mitochondrion | 62.96 | 62.73 |
AT2G29330.1 | Thale cress | cytosol, peroxisome, plastid | 60.37 | 62.69 |
Bra018396.1-P | Field mustard | cytosol | 60.74 | 62.6 |
CDY31772 | Canola | cytosol, peroxisome, plastid | 60.74 | 62.6 |
CDY45438 | Canola | cytosol | 60.74 | 62.6 |
CDY31774 | Canola | cytosol | 54.44 | 62.55 |
Bra039974.1-P | Field mustard | cytosol, plasma membrane, plastid | 60.74 | 62.36 |
CDY40186 | Canola | cytosol | 47.78 | 62.32 |
Bra039971.1-P | Field mustard | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 60.37 | 62.21 |
CDX97899 | Canola | peroxisome | 60.37 | 62.21 |
CDY40188 | Canola | cytosol, peroxisome, plasma membrane | 60.37 | 62.21 |
VIT_08s0007g00920.t01 | Wine grape | peroxisome | 61.48 | 62.17 |
CDX97895 | Canola | cytosol | 54.07 | 62.13 |
KRH24733 | Soybean | nucleus | 60.74 | 61.89 |
Bra000477.1-P | Field mustard | plastid | 60.0 | 61.83 |
CDX83306 | Canola | plastid | 60.0 | 61.83 |
CDX95753 | Canola | cytosol, peroxisome, plastid | 60.0 | 61.83 |
CDY40165 | Canola | plastid | 60.0 | 61.83 |
CDY45432 | Canola | cytosol | 60.0 | 61.83 |
CDX95750 | Canola | cytosol | 62.59 | 61.68 |
Bra018402.1-P | Field mustard | cytosol | 50.0 | 61.64 |
Bra039976.1-P | Field mustard | cytosol | 61.85 | 61.62 |
CDY31776 | Canola | cytosol, peroxisome, plastid | 61.85 | 61.62 |
AT2G29310.1 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 59.63 | 61.45 |
Bra039514.1-P | Field mustard | cytosol, peroxisome, plastid | 59.63 | 61.45 |
CDY45441 | Canola | cytosol | 50.74 | 61.16 |
CDY40171 | Canola | cytosol | 50.0 | 61.09 |
Bra000476.1-P | Field mustard | cytosol, peroxisome, plastid | 59.26 | 61.07 |
Bra039973.1-P | Field mustard | plastid | 59.26 | 61.07 |
CDY31768 | Canola | cytosol, peroxisome, plastid | 59.26 | 61.07 |
AT2G29320.1 | Thale cress | mitochondrion | 60.74 | 60.97 |
Bra018405.1-P | Field mustard | cytosol | 58.89 | 60.69 |
Bra039513.1-P | Field mustard | peroxisome | 58.89 | 60.69 |
Bra039967.1-P | Field mustard | plastid | 58.89 | 60.69 |
CDY40185 | Canola | plastid | 58.89 | 60.69 |
KRH24732 | Soybean | cytosol, endoplasmic reticulum, plastid | 60.37 | 60.59 |
Bra018401.1-P | Field mustard | cytosol | 56.67 | 60.47 |
CDX83307 | Canola | peroxisome | 58.52 | 60.31 |
CDX95751 | Canola | peroxisome | 58.52 | 60.31 |
CDY31773 | Canola | plastid | 58.52 | 60.31 |
Bra018404.1-P | Field mustard | cytosol | 41.48 | 60.22 |
CDY51372 | Canola | plastid | 61.85 | 59.86 |
Bra039977.1-P | Field mustard | plastid | 42.22 | 59.07 |
CDY31770 | Canola | plastid | 50.37 | 58.62 |
Bra018399.1-P | Field mustard | cytosol, peroxisome, plastid | 56.3 | 58.02 |
CDY40182 | Canola | cytosol, peroxisome, plastid | 56.3 | 58.02 |
CDY45435 | Canola | cytosol, peroxisome, plastid | 56.3 | 58.02 |
CDX97897 | Canola | cytosol, extracellular | 49.63 | 58.01 |
CDY45433 | Canola | cytosol | 51.85 | 57.14 |
VIT_13s0019g02170.t01 | Wine grape | mitochondrion, nucleus, peroxisome, plastid | 58.89 | 55.79 |
AT2G29300.2 | Thale cress | extracellular | 58.52 | 55.24 |
GSMUA_Achr5P04570_001 | Banana | cytosol | 25.93 | 55.12 |
Bra039966.1-P | Field mustard | cytosol | 58.52 | 54.86 |
CDY16436 | Canola | endoplasmic reticulum, vacuole | 20.74 | 53.33 |
AT2G29340.1 | Thale cress | cytosol, endoplasmic reticulum, peroxisome | 60.37 | 53.09 |
CDY40177 | Canola | cytosol | 53.7 | 52.35 |
CDX95752 | Canola | cytosol | 45.93 | 52.1 |
KRH29740 | Soybean | cytosol | 18.52 | 51.02 |
CDX97890 | Canola | cytosol | 61.11 | 48.67 |
Bra027961.1-P | Field mustard | cytosol | 52.59 | 46.86 |
CDY65683 | Canola | cytosol, mitochondrion | 62.59 | 42.36 |
CDY31767 | Canola | plastid | 64.81 | 31.08 |
VIT_19s0085g00500.t01 | Wine grape | peroxisome | 28.15 | 25.59 |
VIT_01s0011g01520.t01 | Wine grape | peroxisome | 26.67 | 24.24 |
VIT_14s0128g00340.t01 | Wine grape | plastid | 28.89 | 22.87 |
CDY50145 | Canola | plastid | 60.37 | 22.51 |
VIT_17s0000g08740.t01 | Wine grape | cytosol | 8.89 | 19.51 |
VIT_00s0516g00030.t01 | Wine grape | cytosol, peroxisome | 29.63 | 7.77 |
Protein Annotations
EntrezGene:100248386 | EntrezGene:100260356 | wikigene:100260356 | EntrezGene:100263790 | wikigene:100263790 | EntrezGene:100267258 |
wikigene:100267258 | EntrezGene:100855239 | wikigene:100855239 | Gene3D:3.40.50.720 | MapMan:50.1.1 | EMBL:AM440413 |
EMBL:AM460947 | ProteinID:CAN63543 | ProteinID:CAN63543.1 | ProteinID:CAN69507 | ProteinID:CAN69507.1 | ProteinID:CBI16066 |
ProteinID:CBI16066.3 | UniProt:D7SK90 | EMBL:FN594951 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 |
GO:GO:0008152 | GO:GO:0016491 | GO:GO:0055114 | EntrezGene:LOC100248386 | EntrezGene:LOC100260356 | wikigene:LOC100260356 |
EntrezGene:LOC100263790 | wikigene:LOC100263790 | EntrezGene:LOC100267258 | wikigene:LOC100267258 | EntrezGene:LOC100855239 | wikigene:LOC100855239 |
InterPro:NAD(P)-bd_dom_sf | PFAM:PF13561 | PRINTS:PR00080 | PRINTS:PR00081 | ScanProsite:PS00061 | PANTHER:PTHR42898 |
PANTHER:PTHR42898:SF7 | InterPro:SDR_fam | SUPFAM:SSF51735 | InterPro:Sc_DH/Rdtase_CS | TIGR:TC52437 | UniParc:UPI00015C80CF |
ArrayExpress:VIT_06s0004g05380 | EnsemblPlantsGene:VIT_06s0004g05380 | EnsemblPlants:VIT_06s0004g05380.t01 | unigene:Vvi.2399 | unigene:Vvi.24535 | unigene:Vvi.24569 |
unigene:Vvi.24817 | RefSeq:XP_003632143 | RefSeq:XP_003632143.1 | RefSeq:XP_010650989.1 | RefSeq:XP_019076094.1 | : |
Description
No Description!
Coordinates
chr6:+:6240033..6241726
Molecular Weight (calculated)
28787.8 Da
IEP (calculated)
7.986
GRAVY (calculated)
0.166
Length
270 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQTFGCSSG DSRWSLKGMT ALVTGGTKGI GHAIVEELAG LGATIHTCSR KETELNECLK DWKAKGFGVS GSVCDVSSRA QREKLMETVS SVFKGKLNIL
101: VNNAAIVIQK PTVEVTAEEF STIMAINFES VYHLSQLAHP LLKASGAGSI VFISSVAGVV SVKYLSAYAV TKGAMNQLTK NLACEWAEDN IRSNAVAPWC
201: IKTPMVDQML SNKTFLEGVI NRAPLRRVGD PKEVSSLVAF LCLPASSYIT GQTICVDGGV TVNGFEPNLF
101: VNNAAIVIQK PTVEVTAEEF STIMAINFES VYHLSQLAHP LLKASGAGSI VFISSVAGVV SVKYLSAYAV TKGAMNQLTK NLACEWAEDN IRSNAVAPWC
201: IKTPMVDQML SNKTFLEGVI NRAPLRRVGD PKEVSSLVAF LCLPASSYIT GQTICVDGGV TVNGFEPNLF
001: MVLDMASHLY TNPPQNLHFI SSSSSLKPHL CLSFKRINPK HKSSSSSVFV PYASQSSIAI TSKERWSLNG MSALVTGGTR GIGRAIVEEL AGLGAEVHTC
101: ARNEYELENC LSDWNRSGFR VAGSVCDVSD RSQREALMET VSSVFEGKLH ILVNNVGTNI RKPMVEFTAG EFSTLMSTNF ESVFHLCQLA YPLLRESKAG
201: SVVFISSVSG FVSLKNMSVQ SSTKGAINQL TRSLACEWAK DNIRINAVAP WYIKTSMVEQ VLSNKEYLEE VYSVTPLGRL GEPREVSSAV AFLCLPASSY
301: ITGQILCVDG GMSINGFFPR HD
101: ARNEYELENC LSDWNRSGFR VAGSVCDVSD RSQREALMET VSSVFEGKLH ILVNNVGTNI RKPMVEFTAG EFSTLMSTNF ESVFHLCQLA YPLLRESKAG
201: SVVFISSVSG FVSLKNMSVQ SSTKGAINQL TRSLACEWAK DNIRINAVAP WYIKTSMVEQ VLSNKEYLEE VYSVTPLGRL GEPREVSSAV AFLCLPASSY
301: ITGQILCVDG GMSINGFFPR HD
Arabidopsis Description
Tropinone reductase homolog At2g29260, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZW12]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.