Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G29310.1 | CDY06260 | AT1G07450.1 | 21798944 |
| AT2G29310.1 | CDY09917 | AT1G07450.1 | 21798944 |
| AT2G29310.1 | CDX95752 | AT2G29310.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039514.1-P | Field mustard | cytosol, peroxisome, plastid | 81.51 | 74.05 |
| Bra000476.1-P | Field mustard | cytosol, peroxisome, plastid | 81.09 | 73.66 |
| CDY40186 | Canola | cytosol | 63.03 | 72.46 |
| CDY31773 | Canola | plastid | 71.43 | 64.89 |
| CDY31768 | Canola | cytosol, peroxisome, plastid | 70.59 | 64.12 |
| CDY40188 | Canola | cytosol, peroxisome, plasma membrane | 70.17 | 63.74 |
| CDY45432 | Canola | cytosol | 70.17 | 63.74 |
| CDX83306 | Canola | plastid | 69.75 | 63.36 |
| CDY31772 | Canola | cytosol, peroxisome, plastid | 69.75 | 63.36 |
| CDX95753 | Canola | cytosol, peroxisome, plastid | 69.33 | 62.98 |
| CDX83307 | Canola | peroxisome | 69.33 | 62.98 |
| CDY40182 | Canola | cytosol, peroxisome, plastid | 69.33 | 62.98 |
| CDX97899 | Canola | peroxisome | 68.91 | 62.6 |
| AT2G29310.1 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 68.91 | 62.6 |
| CDY45435 | Canola | cytosol, peroxisome, plastid | 68.49 | 62.21 |
| CDY40179 | Canola | cytosol, peroxisome, plastid | 68.07 | 62.07 |
| CDX95751 | Canola | peroxisome | 68.07 | 61.83 |
| CDY40175 | Canola | plasma membrane | 68.07 | 61.83 |
| CDY45438 | Canola | cytosol | 67.65 | 61.45 |
| CDY40185 | Canola | plastid | 66.39 | 60.31 |
| CDY45434 | Canola | cytosol, nucleus, plastid | 65.97 | 59.92 |
| CDY40183 | Canola | plastid | 65.97 | 59.92 |
| Solyc03g096650.1.1 | Tomato | cytosol | 22.27 | 59.55 |
| CDY62820 | Canola | cytosol, endoplasmic reticulum, peroxisome | 65.55 | 59.32 |
| CDX97897 | Canola | cytosol, extracellular | 57.14 | 58.87 |
| CDY40165 | Canola | plastid | 64.71 | 58.78 |
| VIT_06s0004g05400.t01 | Wine grape | cytosol | 26.89 | 57.66 |
| VIT_06s0004g05440.t01 | Wine grape | cytosol | 19.75 | 57.32 |
| CDY31774 | Canola | cytosol | 56.3 | 57.02 |
| CDY40171 | Canola | cytosol | 52.94 | 57.01 |
| CDX97895 | Canola | cytosol | 55.88 | 56.6 |
| CDY45433 | Canola | cytosol | 57.56 | 55.92 |
| CDY45441 | Canola | cytosol | 52.52 | 55.8 |
| VIT_06s0004g05310.t01 | Wine grape | cytosol | 26.47 | 55.75 |
| CDX86486 | Canola | cytosol, peroxisome, plastid | 60.92 | 55.34 |
| CDY09917 | Canola | cytosol | 59.66 | 54.2 |
| CDY68057 | Canola | cytosol | 59.66 | 54.2 |
| CDY72061 | Canola | cytosol | 24.79 | 54.13 |
| CDY31770 | Canola | plastid | 52.1 | 53.45 |
| CDY06260 | Canola | plastid | 58.82 | 53.44 |
| CDY04975 | Canola | mitochondrion | 24.79 | 52.68 |
| CDX86485 | Canola | cytosol, peroxisome, plastid | 57.98 | 52.67 |
| CDY06706 | Canola | mitochondrion | 57.98 | 51.88 |
| CDY40177 | Canola | cytosol | 60.08 | 51.62 |
| CDY10276 | Canola | mitochondrion | 57.56 | 51.5 |
| CDY14610 | Canola | mitochondrion | 57.56 | 51.5 |
| CDY16436 | Canola | endoplasmic reticulum, vacuole | 22.69 | 51.43 |
| CDY52942 | Canola | mitochondrion | 56.3 | 50.38 |
| CDY16437 | Canola | mitochondrion | 56.3 | 50.38 |
| KRH24731 | Soybean | nucleus | 55.04 | 49.06 |
| CDY31776 | Canola | cytosol, peroxisome, plastid | 53.78 | 47.23 |
| VIT_06s0004g05320.t01 | Wine grape | endoplasmic reticulum, peroxisome, plastid | 50.0 | 47.22 |
| KRH29740 | Soybean | cytosol | 19.33 | 46.94 |
| KRH24732 | Soybean | cytosol, endoplasmic reticulum, plastid | 52.94 | 46.84 |
| KRH24733 | Soybean | nucleus | 52.1 | 46.79 |
| CDY04977 | Canola | peroxisome | 51.68 | 46.77 |
| CDX98899 | Canola | peroxisome | 51.26 | 46.56 |
| CDX97893 | Canola | mitochondrion | 52.94 | 46.49 |
| CDY09824 | Canola | mitochondrion | 52.94 | 46.49 |
| CDY09823 | Canola | peroxisome | 52.94 | 46.49 |
| CDY14094 | Canola | peroxisome | 51.26 | 46.39 |
| CDX70101 | Canola | peroxisome | 50.84 | 46.18 |
| VIT_06s0004g05370.t01 | Wine grape | peroxisome | 48.74 | 46.03 |
| VIT_06s0004g05380.t01 | Wine grape | plastid | 52.1 | 45.93 |
| VIT_06s0004g05430.t01 | Wine grape | mitochondrion, nucleus, peroxisome | 52.1 | 45.93 |
| CDX95750 | Canola | cytosol | 52.1 | 45.26 |
| CDY51372 | Canola | plastid | 52.52 | 44.8 |
| CDY64214 | Canola | mitochondrion | 31.93 | 44.44 |
| VIT_06s0004g05330.t01 | Wine grape | peroxisome | 45.8 | 42.91 |
| GSMUA_Achr5P04570_001 | Banana | cytosol | 22.69 | 42.52 |
| VIT_06s0004g05360.t01 | Wine grape | cytosol, mitochondrion, plastid | 40.76 | 40.42 |
| VIT_06s0004g05390.t01 | Wine grape | cytosol, plasma membrane, plastid | 38.24 | 36.99 |
| CDX97890 | Canola | cytosol | 52.52 | 36.87 |
| CDX98898 | Canola | cytosol, peroxisome, plasma membrane | 47.48 | 36.45 |
| CDY65683 | Canola | cytosol, mitochondrion | 57.14 | 34.09 |
| VIT_06s0004g05450.t01 | Wine grape | plasma membrane | 25.63 | 33.89 |
| CDY35991 | Canola | plastid | 15.13 | 29.03 |
| CDY31767 | Canola | plastid | 62.6 | 26.47 |
| CDX94534 | Canola | peroxisome | 26.05 | 24.31 |
| CDY16690 | Canola | peroxisome | 26.05 | 24.31 |
| CDY35231 | Canola | peroxisome | 12.61 | 24.19 |
| CDX76382 | Canola | cytosol, mitochondrion, peroxisome | 25.63 | 23.74 |
| CDY27447 | Canola | cytosol, mitochondrion, peroxisome | 25.63 | 23.64 |
| CDY50145 | Canola | plastid | 70.59 | 23.2 |
| CDY43488 | Canola | cytosol | 25.21 | 20.76 |
| CDY27781 | Canola | cytosol, peroxisome, plastid | 24.37 | 20.07 |
| CDY17559 | Canola | cytoskeleton, nucleus, peroxisome | 23.95 | 19.86 |
| CDY08402 | Canola | cytosol | 23.95 | 19.39 |
| CDY00799 | Canola | peroxisome | 23.11 | 18.46 |
| CDX73802 | Canola | peroxisome | 23.11 | 18.46 |
| CDY05152 | Canola | cytosol | 17.65 | 17.57 |
| CDY05153 | Canola | cytosol, nucleus, plastid | 4.62 | 15.71 |
Protein Annotations
| EnsemblPlants:CDX95752 | EnsemblPlantsGene:GSBRNA2T00101660001 | Gene3D:3.40.50.720 | GO:A0A078E3M9 | InterPro:NAD(P)-bd_dom_sf | InterPro:SDR_fam |
| PANTHER:PTHR42898 | PANTHER:PTHR42898:SF7 | PFAM:PF00106 | PRINTS:PR00081 | ProteinID:CDX95752 | ProteinID:CDX95752.1 |
| SUPFAM:SSF51735 | UniParc:UPI0004EF21F5 | MapMan:35.1 | : | : | : |
Description
BnaC03g26330D
Coordinates
chrLK031890:-:1155565..1160280
Molecular Weight (calculated)
25934.3 Da
IEP (calculated)
8.598
GRAVY (calculated)
-0.041
Length
238 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKRWSLQGM TALVTGGAGG IGHAIVDELS AFGARIHVCD ISETLLSQSL SEWEKKGFQV SGSVCDVTSR PERETLIQTV SSLFDGKLNI LVNNVGGLRE
101: KPTTEYGSDD FTFHILINHK GARNQLARNL ACEWAKDGIR ANAVAPNSIR TPLSQQEAFF SRTPLGRIGE PNEVASLVAF LCLPAASYIT GQPICVEVSP
201: INHMLENGLA ACYKTVLRNG KKKTVFKSVR YLIKILTL
101: KPTTEYGSDD FTFHILINHK GARNQLARNL ACEWAKDGIR ANAVAPNSIR TPLSQQEAFF SRTPLGRIGE PNEVASLVAF LCLPAASYIT GQPICVEVSP
201: INHMLENGLA ACYKTVLRNG KKKTVFKSVR YLIKILTL
001: MDKRWSLQGM TALVTGAASG IGYAIVEELA GFGARIHVCD ISETLLNQSL REWEKKGFQV SGSVCDVTSR PEREKLMQTV SSLFDGKLNI LVNNVGVLRA
101: KPTTEYVADD FTFHISTNLE AAYHFCQLSH PLLKTSGYGS IVFLSSVSGV VSITDCGSLY GLTKGALNQL ARNLACEWAK DGIRANAVAP NVVKTAQSQF
201: FLQDVSKKEG LFSRTPLGRS GEPNEVASLV VFLCLPAASY ITGQTICIDG GLTVYGFSSQ PQA
101: KPTTEYVADD FTFHISTNLE AAYHFCQLSH PLLKTSGYGS IVFLSSVSGV VSITDCGSLY GLTKGALNQL ARNLACEWAK DGIRANAVAP NVVKTAQSQF
201: FLQDVSKKEG LFSRTPLGRS GEPNEVASLV VFLCLPAASY ITGQTICIDG GLTVYGFSSQ PQA
Arabidopsis Description
NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IKL5]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.