Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- plasma membrane 2
- plastid 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
VIT_06s0004g05400.t01 | Wine grape | cytosol | 34.55 | 76.58 |
VIT_06s0004g05310.t01 | Wine grape | cytosol | 34.96 | 76.11 |
VIT_06s0004g05440.t01 | Wine grape | cytosol | 24.8 | 74.39 |
VIT_06s0004g05320.t01 | Wine grape | endoplasmic reticulum, peroxisome, plastid | 74.8 | 73.02 |
VIT_06s0004g05430.t01 | Wine grape | mitochondrion, nucleus, peroxisome | 79.27 | 72.22 |
VIT_06s0004g05330.t01 | Wine grape | peroxisome | 74.39 | 72.05 |
VIT_06s0004g05380.t01 | Wine grape | plastid | 75.2 | 68.52 |
VIT_06s0004g05370.t01 | Wine grape | peroxisome | 63.41 | 61.9 |
VIT_06s0004g05360.t01 | Wine grape | cytosol, mitochondrion, plastid | 60.16 | 61.67 |
Solyc03g096650.1.1 | Tomato | cytosol | 21.14 | 58.43 |
VIT_06s0004g05450.t01 | Wine grape | plasma membrane | 42.68 | 58.33 |
VIT_06s0004g05280.t01 | Wine grape | cytosol, nucleus, peroxisome | 59.35 | 57.94 |
Bra027962.1-P | Field mustard | cytosol | 37.8 | 53.76 |
VIT_13s0019g02180.t01 | Wine grape | peroxisome, plasma membrane, plastid | 58.54 | 53.73 |
CDY64214 | Canola | mitochondrion | 36.99 | 53.22 |
CDX86486 | Canola | cytosol, peroxisome, plastid | 56.5 | 53.05 |
CDY45441 | Canola | cytosol | 47.56 | 52.23 |
AT2G29360.1 | Thale cress | cytosol | 56.91 | 51.66 |
Bra030683.1-P | Field mustard | cytosol, mitochondrion, plastid | 54.88 | 51.53 |
Bra018393.1-P | Field mustard | cytosol | 54.47 | 51.15 |
CDY68057 | Canola | cytosol | 54.47 | 51.15 |
AT2G29370.1 | Thale cress | peroxisome | 55.69 | 51.12 |
VIT_08s0007g00890.t01 | Wine grape | peroxisome | 51.63 | 50.8 |
AT1G07450.1 | Thale cress | cytosol, nucleus, peroxisome | 53.66 | 50.77 |
Bra018391.1-P | Field mustard | cytosol | 54.06 | 50.76 |
AT1G07440.1 | Thale cress | mitochondrion | 54.88 | 50.75 |
CDY52942 | Canola | mitochondrion | 54.88 | 50.75 |
Bra018402.1-P | Field mustard | cytosol | 45.12 | 50.68 |
CDY09917 | Canola | cytosol | 53.66 | 50.38 |
CDY40175 | Canola | plasma membrane | 53.66 | 50.38 |
CDY45434 | Canola | cytosol, nucleus, plastid | 53.66 | 50.38 |
VIT_08s0007g00900.t01 | Wine grape | mitochondrion, plastid | 53.66 | 50.38 |
AT2G29330.1 | Thale cress | cytosol, peroxisome, plastid | 52.85 | 50.0 |
AT2G30670.1 | Thale cress | cytosol, nucleus, peroxisome | 53.25 | 50.0 |
Bra018400.1-P | Field mustard | cytosol, nucleus, plastid | 53.25 | 50.0 |
Bra039755.1-P | Field mustard | mitochondrion | 54.06 | 50.0 |
CDX86485 | Canola | cytosol, peroxisome, plastid | 53.25 | 50.0 |
CDY16437 | Canola | mitochondrion | 54.06 | 50.0 |
CDY40188 | Canola | cytosol, peroxisome, plasma membrane | 53.25 | 50.0 |
VIT_13s0019g02130.t01 | Wine grape | peroxisome | 54.47 | 50.0 |
Bra039974.1-P | Field mustard | cytosol, plasma membrane, plastid | 53.25 | 49.81 |
CDY40179 | Canola | cytosol, peroxisome, plastid | 52.85 | 49.81 |
AT2G29150.1 | Thale cress | peroxisome | 54.06 | 49.63 |
Bra018396.1-P | Field mustard | cytosol | 52.85 | 49.62 |
Bra031575.1-P | Field mustard | plastid | 52.85 | 49.62 |
CDY40165 | Canola | plastid | 52.85 | 49.62 |
CDY40183 | Canola | plastid | 52.85 | 49.62 |
CDY45432 | Canola | cytosol | 52.85 | 49.62 |
CDY45438 | Canola | cytosol | 52.85 | 49.62 |
AT2G29170.1 | Thale cress | cytosol | 21.54 | 49.53 |
Bra039969.1-P | Field mustard | cytosol | 52.85 | 49.43 |
CDY62820 | Canola | cytosol, endoplasmic reticulum, peroxisome | 52.85 | 49.43 |
AT2G29290.2 | Thale cress | plastid | 52.44 | 49.24 |
CDY06260 | Canola | plastid | 52.44 | 49.24 |
AT2G29350.1 | Thale cress | plastid | 53.66 | 49.07 |
KRH29740 | Soybean | cytosol | 19.51 | 48.98 |
Bra018404.1-P | Field mustard | cytosol | 36.99 | 48.92 |
Bra018405.1-P | Field mustard | cytosol | 52.03 | 48.85 |
VIT_13s0019g02140.t01 | Wine grape | peroxisome | 53.66 | 48.71 |
VIT_08s0007g00920.t01 | Wine grape | peroxisome | 52.85 | 48.69 |
CDY72061 | Canola | cytosol | 21.54 | 48.62 |
CDY31774 | Canola | cytosol | 46.34 | 48.51 |
Bra015580.1-P | Field mustard | mitochondrion | 52.44 | 48.5 |
CDY06706 | Canola | mitochondrion | 52.44 | 48.5 |
CDY10276 | Canola | mitochondrion | 52.44 | 48.5 |
CDY14610 | Canola | mitochondrion | 52.44 | 48.5 |
Bra039973.1-P | Field mustard | plastid | 51.63 | 48.47 |
CDY31772 | Canola | cytosol, peroxisome, plastid | 51.63 | 48.47 |
CDX97893 | Canola | mitochondrion | 53.25 | 48.34 |
CDY09824 | Canola | mitochondrion | 53.25 | 48.34 |
CDX95750 | Canola | cytosol | 53.66 | 48.18 |
Bra039971.1-P | Field mustard | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 51.22 | 48.09 |
CDX97895 | Canola | cytosol | 45.94 | 48.09 |
CDY09823 | Canola | peroxisome | 52.85 | 47.97 |
Bra018401.1-P | Field mustard | cytosol | 49.19 | 47.83 |
CDX97899 | Canola | peroxisome | 50.81 | 47.71 |
CDY31768 | Canola | cytosol, peroxisome, plastid | 50.81 | 47.71 |
CDY31773 | Canola | plastid | 50.81 | 47.71 |
CDY45433 | Canola | cytosol | 47.15 | 47.35 |
AT2G29310.1 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 50.41 | 47.33 |
Bra000477.1-P | Field mustard | plastid | 50.41 | 47.33 |
Bra039967.1-P | Field mustard | plastid | 50.41 | 47.33 |
CDX83306 | Canola | plastid | 50.41 | 47.33 |
CDX95751 | Canola | peroxisome | 50.41 | 47.33 |
CDX95753 | Canola | cytosol, peroxisome, plastid | 50.41 | 47.33 |
Bra039976.1-P | Field mustard | cytosol | 52.03 | 47.23 |
CDY31776 | Canola | cytosol, peroxisome, plastid | 52.03 | 47.23 |
Bra039513.1-P | Field mustard | peroxisome | 50.0 | 46.95 |
CDY40185 | Canola | plastid | 50.0 | 46.95 |
AT2G29320.1 | Thale cress | mitochondrion | 51.22 | 46.84 |
KRH24731 | Soybean | nucleus | 50.81 | 46.82 |
KRH24733 | Soybean | nucleus | 50.41 | 46.79 |
CDX83307 | Canola | peroxisome | 49.59 | 46.56 |
CDY40186 | Canola | cytosol | 39.02 | 46.38 |
Bra039514.1-P | Field mustard | cytosol, peroxisome, plastid | 49.19 | 46.18 |
CDY40171 | Canola | cytosol | 41.46 | 46.15 |
Bra000476.1-P | Field mustard | cytosol, peroxisome, plastid | 48.78 | 45.8 |
Bra018399.1-P | Field mustard | cytosol, peroxisome, plastid | 48.78 | 45.8 |
CDY40182 | Canola | cytosol, peroxisome, plastid | 48.78 | 45.8 |
CDY45435 | Canola | cytosol, peroxisome, plastid | 48.78 | 45.8 |
Bra039966.1-P | Field mustard | cytosol | 52.85 | 45.14 |
CDX97897 | Canola | cytosol, extracellular | 42.28 | 45.02 |
CDY51372 | Canola | plastid | 50.41 | 44.44 |
KRH24732 | Soybean | cytosol, endoplasmic reticulum, plastid | 48.37 | 44.24 |
CDY31770 | Canola | plastid | 41.46 | 43.97 |
Bra039977.1-P | Field mustard | plastid | 34.15 | 43.52 |
AT2G29300.2 | Thale cress | extracellular | 50.0 | 43.01 |
GSMUA_Achr5P04570_001 | Banana | cytosol | 21.95 | 42.52 |
VIT_13s0019g02170.t01 | Wine grape | mitochondrion, nucleus, peroxisome, plastid | 48.37 | 41.75 |
AT2G29340.1 | Thale cress | cytosol, endoplasmic reticulum, peroxisome | 50.81 | 40.72 |
CDY40177 | Canola | cytosol | 45.53 | 40.43 |
CDY16436 | Canola | endoplasmic reticulum, vacuole | 17.07 | 40.0 |
CDX95752 | Canola | cytosol | 36.99 | 38.24 |
Bra027961.1-P | Field mustard | cytosol | 46.75 | 37.95 |
CDX97890 | Canola | cytosol | 49.59 | 35.99 |
CDY65683 | Canola | cytosol, mitochondrion | 54.47 | 33.58 |
CDY31767 | Canola | plastid | 55.69 | 24.33 |
VIT_19s0085g00500.t01 | Wine grape | peroxisome | 21.54 | 17.85 |
CDY50145 | Canola | plastid | 51.22 | 17.4 |
VIT_01s0011g01520.t01 | Wine grape | peroxisome | 20.73 | 17.17 |
VIT_14s0128g00340.t01 | Wine grape | plastid | 22.76 | 16.42 |
VIT_17s0000g08740.t01 | Wine grape | cytosol | 7.72 | 15.45 |
VIT_00s0516g00030.t01 | Wine grape | cytosol, peroxisome | 21.95 | 5.25 |
Protein Annotations
ArrayExpress:VIT_06s0004g05390 | EMBL:FN594951 | EnsemblPlants:VIT_06s0004g05390.t01 | EnsemblPlantsGene:VIT_06s0004g05390 | Gene3D:3.40.50.720 | InterPro:NAD(P)-bd_dom_sf |
InterPro:SDR_fam | PANTHER:PTHR42898 | PANTHER:PTHR42898:SF7 | PFAM:PF00106 | PFAM:PF13561 | PRINTS:PR00081 |
ProteinID:CCB43539 | ProteinID:CCB43539.1 | SEG:seg | SUPFAM:SSF51735 | UniParc:UPI00021091CB | UniProt:F6GUY1 |
MapMan:50.1.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6:+:6242525..6254394
Molecular Weight (calculated)
27154.7 Da
IEP (calculated)
7.072
GRAVY (calculated)
0.074
Length
246 amino acids
Sequence
(BLAST)
(BLAST)
001: MINYTKEKQI FFFYQNYEGG EGGALSFHRY CSVLWWCSIW HAIVEELAGL GATIHTCSRK ETELNECLKD WKAKGFGVSG SVCDVSSRAQ REKLMQTTSS
101: VFNGKLNILK PTVEVTAEEF STIMATNFES VYHLSQIAHP LLKASGTGSI VFISSVSGIV AHKNISAYSV TKAPWYIKTP MVEPMLTNQA FLEEVINRAP
201: LRRVGDPKEV SSLVAFLCLP ASSYITGQII CVDGGMTVNG FESNLL
101: VFNGKLNILK PTVEVTAEEF STIMATNFES VYHLSQIAHP LLKASGTGSI VFISSVSGIV AHKNISAYSV TKAPWYIKTP MVEPMLTNQA FLEEVINRAP
201: LRRVGDPKEV SSLVAFLCLP ASSYITGQII CVDGGMTVNG FESNLL
001: MAGAEQSQRW SLKAKTVLVT GGTKGIGHAI VEEFAGFGAV IHTCARNEYE LNECLSKWQK KGFQVTGSVC DASLRPEREK LMQTVSSMFG GKLDILINNL
101: GAIRSKPTLD YTAEDFSFHI STNLESAYHL SQLAHPLLKA SGCGNIIFMS SIAGVVSASV GSIYSATKGA LNQLARNLAC EWASDGIRAN AVAPAVIATP
201: LAEAVYDDEF KKVVISRKPL GRFGEPEEVS SLVAFLCMPA ASYITGQTIC VDGGLTVNGF SYQPQG
101: GAIRSKPTLD YTAEDFSFHI STNLESAYHL SQLAHPLLKA SGCGNIIFMS SIAGVVSASV GSIYSATKGA LNQLARNLAC EWASDGIRAN AVAPAVIATP
201: LAEAVYDDEF KKVVISRKPL GRFGEPEEVS SLVAFLCMPA ASYITGQTIC VDGGLTVNGF SYQPQG
Arabidopsis Description
Tropinone reductase homolog At1g07440 [Source:UniProtKB/Swiss-Prot;Acc:P0DKI3]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.