Factsheet for VIT_06s0004g05280.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

cytosol 3
mitochondrion 2
plastid 1
nucleus 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24734	Soybean	extracellular, plasma membrane, vacuole	35.71	78.95
VIT_06s0004g05320.t01	Wine grape	endoplasmic reticulum, peroxisome, plastid	71.83	71.83
VIT_06s0004g05370.t01	Wine grape	peroxisome	67.86	67.86
VIT_06s0004g05440.t01	Wine grape	cytosol	21.83	67.07
Solyc06g005720.2.1	Tomato	plastid	79.76	66.78
VIT_06s0004g05330.t01	Wine grape	peroxisome	67.06	66.54
VIT_06s0004g05310.t01	Wine grape	cytosol	29.76	66.37
VIT_06s0004g05430.t01	Wine grape	mitochondrion, nucleus, peroxisome	70.63	65.93
VIT_06s0004g05380.t01	Wine grape	plastid	70.63	65.93
VIT_06s0004g05400.t01	Wine grape	cytosol	28.97	65.77
KRH29741	Soybean	plastid	79.76	65.47
VIT_13s0019g02180.t01	Wine grape	peroxisome, plasma membrane, plastid	68.25	64.18
VIT_08s0007g00890.t01	Wine grape	peroxisome	62.3	62.8
VIT_06s0004g05450.t01	Wine grape	plasma membrane	43.65	61.11
VIT_08s0007g00900.t01	Wine grape	mitochondrion, plastid	62.3	59.92
VIT_06s0004g05360.t01	Wine grape	cytosol, mitochondrion, plastid	56.75	59.58
VIT_06s0004g05390.t01	Wine grape	cytosol, plasma membrane, plastid	57.94	59.35
VIT_13s0019g02130.t01	Wine grape	peroxisome	61.11	57.46
VIT_13s0019g02140.t01	Wine grape	peroxisome	61.11	56.83
VIT_08s0007g00920.t01	Wine grape	peroxisome	59.13	55.81
VIT_13s0019g02170.t01	Wine grape	mitochondrion, nucleus, peroxisome, plastid	58.33	51.58
VIT_19s0085g00500.t01	Wine grape	peroxisome	29.37	24.92
VIT_01s0011g01520.t01	Wine grape	peroxisome	26.98	22.9
AT1G36580.1	Thale cress	nucleus	16.67	21.54
VIT_17s0000g08740.t01	Wine grape	cytosol	10.32	21.14
VIT_14s0128g00340.t01	Wine grape	plastid	28.17	20.82
VIT_00s0516g00030.t01	Wine grape	cytosol, peroxisome	28.17	6.9

Protein Annotations

EntrezGene:100251860	wikigene:100251860	Gene3D:3.40.50.720	MapMan:50.1.1	EMBL:AM428261	ProteinID:CAN69103
ProteinID:CAN69103.1	ProteinID:CBI16078	ProteinID:CBI16078.3	UniProt:D7SKA2	EMBL:FN594951	EntrezGene:LOC100251860
wikigene:LOC100251860	InterPro:NAD(P)-bd_dom_sf	PFAM:PF13561	PRINTS:PR00080	PRINTS:PR00081	PANTHER:PTHR42898
PANTHER:PTHR42898:SF2	InterPro:SDR_fam	SUPFAM:SSF51735	UniParc:UPI0001BE0DE5	ArrayExpress:VIT_06s0004g05280	EnsemblPlantsGene:VIT_06s0004g05280
EnsemblPlants:VIT_06s0004g05280.t01	RefSeq:XP_002282638	RefSeq:XP_002282638.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr6:+:6168828..6171524

Molecular Weight (calculated)

27333.8 Da

IEP (calculated)

5.704

GRAVY (calculated)

0.068

Length

252 amino acids

Sequence
(BLAST)

001: MTALVTGGTR GIGHAIVEEL LGLGATVHTC SRNEAELDGC LKGWTGMGFR VTGCVCDVSS RVERERLMDN VCDVFDGKLN ILINNVGTNI RKPVVDFTEE
101: DFSTLMATNF ESVFHTSQLA YPLLKTSGSG SIVFVSSVSG FVSLKSMSVQ GATKGAINQL TKNLACEWAK DNIRSNAVAP WYIRTSMVEK VLGNKEYLEE
201: VFARTPLRRL GDPEEVSSLV AFLCLPASSY ITGQIICVDG GMSVNGFYPR HD

Best Arabidopsis Sequence Match ( AT2G29260.1 )
(BLAST)

001: MVLDMASHLY TNPPQNLHFI SSSSSLKPHL CLSFKRINPK HKSSSSSVFV PYASQSSIAI TSKERWSLNG MSALVTGGTR GIGRAIVEEL AGLGAEVHTC
101: ARNEYELENC LSDWNRSGFR VAGSVCDVSD RSQREALMET VSSVFEGKLH ILVNNVGTNI RKPMVEFTAG EFSTLMSTNF ESVFHLCQLA YPLLRESKAG
201: SVVFISSVSG FVSLKNMSVQ SSTKGAINQL TRSLACEWAK DNIRINAVAP WYIKTSMVEQ VLSNKEYLEE VYSVTPLGRL GEPREVSSAV AFLCLPASSY
301: ITGQILCVDG GMSINGFFPR HD

Arabidopsis Description

Tropinone reductase homolog At2g29260, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZW12]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.