Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 2
- peroxisome 2
- plastid 1
- nucleus 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
VIT_06s0004g05360.t01 | Wine grape | cytosol, mitochondrion, plastid | 79.76 | 83.75 |
VIT_06s0004g05440.t01 | Wine grape | cytosol | 25.4 | 78.05 |
VIT_06s0004g05320.t01 | Wine grape | endoplasmic reticulum, peroxisome, plastid | 76.98 | 76.98 |
VIT_06s0004g05400.t01 | Wine grape | cytosol | 33.73 | 76.58 |
VIT_06s0004g05310.t01 | Wine grape | cytosol | 34.13 | 76.11 |
VIT_06s0004g05330.t01 | Wine grape | peroxisome | 72.62 | 72.05 |
VIT_06s0004g05380.t01 | Wine grape | plastid | 76.59 | 71.48 |
VIT_06s0004g05430.t01 | Wine grape | mitochondrion, nucleus, peroxisome | 74.6 | 69.63 |
Solyc03g096650.1.1 | Tomato | cytosol | 24.21 | 68.54 |
VIT_06s0004g05280.t01 | Wine grape | cytosol, nucleus, peroxisome | 67.86 | 67.86 |
VIT_13s0019g02180.t01 | Wine grape | peroxisome, plasma membrane, plastid | 70.24 | 66.04 |
VIT_08s0007g00890.t01 | Wine grape | peroxisome | 63.49 | 64.0 |
AT2G29370.1 | Thale cress | peroxisome | 67.46 | 63.43 |
VIT_06s0004g05390.t01 | Wine grape | cytosol, plasma membrane, plastid | 61.9 | 63.41 |
AT2G29290.2 | Thale cress | plastid | 65.87 | 63.36 |
AT2G29360.1 | Thale cress | cytosol | 66.67 | 61.99 |
AT2G29150.1 | Thale cress | peroxisome | 65.87 | 61.94 |
AT1G07450.1 | Thale cress | cytosol, nucleus, peroxisome | 63.89 | 61.92 |
Bra030683.1-P | Field mustard | cytosol, mitochondrion, plastid | 64.29 | 61.83 |
CDX86486 | Canola | cytosol, peroxisome, plastid | 64.29 | 61.83 |
CDY68057 | Canola | cytosol | 63.89 | 61.45 |
Bra018402.1-P | Field mustard | cytosol | 53.17 | 61.19 |
AT2G29350.1 | Thale cress | plastid | 65.08 | 60.97 |
CDX95750 | Canola | cytosol | 66.27 | 60.95 |
Bra015580.1-P | Field mustard | mitochondrion | 64.29 | 60.9 |
CDY06706 | Canola | mitochondrion | 64.29 | 60.9 |
VIT_13s0019g02140.t01 | Wine grape | peroxisome | 65.48 | 60.89 |
Bra018404.1-P | Field mustard | cytosol | 44.84 | 60.75 |
CDX86485 | Canola | cytosol, peroxisome, plastid | 63.1 | 60.69 |
VIT_06s0004g05450.t01 | Wine grape | plasma membrane | 43.25 | 60.56 |
CDY40188 | Canola | cytosol, peroxisome, plasma membrane | 62.7 | 60.31 |
AT1G07440.1 | Thale cress | mitochondrion | 63.49 | 60.15 |
CDY10276 | Canola | mitochondrion | 63.49 | 60.15 |
CDY14610 | Canola | mitochondrion | 63.49 | 60.15 |
CDX97893 | Canola | mitochondrion | 64.68 | 60.15 |
CDY09823 | Canola | peroxisome | 64.68 | 60.15 |
CDY09824 | Canola | mitochondrion | 64.68 | 60.15 |
Bra039977.1-P | Field mustard | plastid | 46.03 | 60.1 |
VIT_13s0019g02130.t01 | Wine grape | peroxisome | 63.89 | 60.07 |
AT2G30670.1 | Thale cress | cytosol, nucleus, peroxisome | 62.3 | 59.92 |
CDY09917 | Canola | cytosol | 62.3 | 59.92 |
VIT_08s0007g00900.t01 | Wine grape | mitochondrion, plastid | 62.3 | 59.92 |
CDY40186 | Canola | cytosol | 49.21 | 59.9 |
CDY45441 | Canola | cytosol | 53.17 | 59.82 |
Bra039976.1-P | Field mustard | cytosol | 64.29 | 59.78 |
CDY31776 | Canola | cytosol, peroxisome, plastid | 64.29 | 59.78 |
CDY52942 | Canola | mitochondrion | 63.1 | 59.77 |
AT2G29330.1 | Thale cress | cytosol, peroxisome, plastid | 61.51 | 59.62 |
CDY31772 | Canola | cytosol, peroxisome, plastid | 61.9 | 59.54 |
CDY40183 | Canola | plastid | 61.9 | 59.54 |
CDY45432 | Canola | cytosol | 61.9 | 59.54 |
CDY45434 | Canola | cytosol, nucleus, plastid | 61.9 | 59.54 |
Bra039755.1-P | Field mustard | mitochondrion | 62.7 | 59.4 |
CDY16437 | Canola | mitochondrion | 62.7 | 59.4 |
CDY40179 | Canola | cytosol, peroxisome, plastid | 61.51 | 59.39 |
Bra018401.1-P | Field mustard | cytosol | 59.52 | 59.29 |
Bra018393.1-P | Field mustard | cytosol | 61.51 | 59.16 |
Bra018396.1-P | Field mustard | cytosol | 61.51 | 59.16 |
Bra018400.1-P | Field mustard | cytosol, nucleus, plastid | 61.51 | 59.16 |
Bra031575.1-P | Field mustard | plastid | 61.51 | 59.16 |
CDY45438 | Canola | cytosol | 61.51 | 59.16 |
AT2G29170.1 | Thale cress | cytosol | 25.0 | 58.88 |
CDX97899 | Canola | peroxisome | 61.11 | 58.78 |
CDY06260 | Canola | plastid | 61.11 | 58.78 |
Bra018405.1-P | Field mustard | cytosol | 60.71 | 58.4 |
Bra039514.1-P | Field mustard | cytosol, peroxisome, plastid | 60.71 | 58.4 |
Bra039971.1-P | Field mustard | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 60.71 | 58.4 |
CDY51372 | Canola | plastid | 64.29 | 58.06 |
Bra000476.1-P | Field mustard | cytosol, peroxisome, plastid | 60.32 | 58.02 |
Bra018391.1-P | Field mustard | cytosol | 60.32 | 58.02 |
CDY31768 | Canola | cytosol, peroxisome, plastid | 60.32 | 58.02 |
CDY40165 | Canola | plastid | 60.32 | 58.02 |
AT2G29320.1 | Thale cress | mitochondrion | 61.9 | 57.99 |
Bra027962.1-P | Field mustard | cytosol | 39.68 | 57.8 |
Bra039969.1-P | Field mustard | cytosol | 60.32 | 57.79 |
Bra039974.1-P | Field mustard | cytosol, plasma membrane, plastid | 60.32 | 57.79 |
CDY62820 | Canola | cytosol, endoplasmic reticulum, peroxisome | 60.32 | 57.79 |
Bra039967.1-P | Field mustard | plastid | 59.92 | 57.63 |
CDX95751 | Canola | peroxisome | 59.92 | 57.63 |
CDY40175 | Canola | plasma membrane | 59.92 | 57.63 |
CDY64214 | Canola | mitochondrion | 38.89 | 57.31 |
Bra039513.1-P | Field mustard | peroxisome | 59.52 | 57.25 |
CDY31773 | Canola | plastid | 59.52 | 57.25 |
CDY31774 | Canola | cytosol | 53.17 | 57.02 |
CDX83307 | Canola | peroxisome | 59.13 | 56.87 |
CDY40185 | Canola | plastid | 59.13 | 56.87 |
CDX97895 | Canola | cytosol | 52.78 | 56.6 |
KRH24731 | Soybean | nucleus | 59.92 | 56.55 |
AT2G29310.1 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 58.73 | 56.49 |
Bra018399.1-P | Field mustard | cytosol, peroxisome, plastid | 58.73 | 56.49 |
VIT_08s0007g00920.t01 | Wine grape | peroxisome | 59.52 | 56.18 |
Bra039973.1-P | Field mustard | plastid | 58.33 | 56.11 |
CDY45435 | Canola | cytosol, peroxisome, plastid | 58.33 | 56.11 |
CDY45433 | Canola | cytosol | 54.37 | 55.92 |
CDY40182 | Canola | cytosol, peroxisome, plastid | 57.94 | 55.73 |
CDY72061 | Canola | cytosol | 23.81 | 55.05 |
KRH24733 | Soybean | nucleus | 57.54 | 54.72 |
KRH24732 | Soybean | cytosol, endoplasmic reticulum, plastid | 58.33 | 54.65 |
Bra000477.1-P | Field mustard | plastid | 56.75 | 54.58 |
CDX83306 | Canola | plastid | 56.75 | 54.58 |
CDX97897 | Canola | cytosol, extracellular | 50.0 | 54.55 |
CDX95753 | Canola | cytosol, peroxisome, plastid | 56.35 | 54.2 |
AT2G29300.2 | Thale cress | extracellular | 61.51 | 54.2 |
CDY40171 | Canola | cytosol | 46.83 | 53.39 |
CDY16436 | Canola | endoplasmic reticulum, vacuole | 22.22 | 53.33 |
VIT_13s0019g02170.t01 | Wine grape | mitochondrion, nucleus, peroxisome, plastid | 59.92 | 52.98 |
CDY31770 | Canola | plastid | 48.02 | 52.16 |
Bra039966.1-P | Field mustard | cytosol | 58.33 | 51.04 |
AT2G29340.1 | Thale cress | cytosol, endoplasmic reticulum, peroxisome | 60.71 | 49.84 |
CDY40177 | Canola | cytosol | 54.37 | 49.46 |
KRH29740 | Soybean | cytosol | 19.05 | 48.98 |
GSMUA_Achr5P04570_001 | Banana | cytosol | 24.6 | 48.82 |
CDX95752 | Canola | cytosol | 46.03 | 48.74 |
CDX97890 | Canola | cytosol | 63.49 | 47.2 |
Bra027961.1-P | Field mustard | cytosol | 54.37 | 45.21 |
CDY65683 | Canola | cytosol, mitochondrion | 61.9 | 39.1 |
CDY31767 | Canola | plastid | 64.68 | 28.95 |
VIT_19s0085g00500.t01 | Wine grape | peroxisome | 27.38 | 23.23 |
VIT_17s0000g08740.t01 | Wine grape | cytosol | 11.11 | 22.76 |
VIT_01s0011g01520.t01 | Wine grape | peroxisome | 26.19 | 22.22 |
CDY50145 | Canola | plastid | 60.32 | 20.99 |
VIT_14s0128g00340.t01 | Wine grape | plastid | 28.17 | 20.82 |
VIT_00s0516g00030.t01 | Wine grape | cytosol, peroxisome | 28.17 | 6.9 |
Protein Annotations
EntrezGene:100248386 | wikigene:100248386 | Gene3D:3.40.50.720 | MapMan:50.1.1 | ProteinID:CBI16068 | ProteinID:CBI16068.3 |
UniProt:D7SK92 | EMBL:FN594951 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 | GO:GO:0008152 |
GO:GO:0016491 | GO:GO:0055114 | EntrezGene:LOC100248386 | wikigene:LOC100248386 | InterPro:NAD(P)-bd_dom_sf | PFAM:PF13561 |
PRINTS:PR00080 | PRINTS:PR00081 | ScanProsite:PS00061 | PANTHER:PTHR42898 | PANTHER:PTHR42898:SF2 | InterPro:SDR_fam |
SMART:SM00822 | SUPFAM:SSF51735 | InterPro:Sc_DH/Rdtase_CS | UniParc:UPI0001BE0DDE | ArrayExpress:VIT_06s0004g05370 | EnsemblPlantsGene:VIT_06s0004g05370 |
EnsemblPlants:VIT_06s0004g05370.t01 | RefSeq:XP_002280517 | RefSeq:XP_002280517.2 | : | : | : |
Description
No Description!
Coordinates
chr6:+:6228895..6230046
Molecular Weight (calculated)
27099.6 Da
IEP (calculated)
7.312
GRAVY (calculated)
0.060
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: MTALVTGGTR GIGHAVVEEL TGLGARIHTC SRTETELNEY LRDWEGKGFE VTGSVCDVSS RAQREKLMET VSSKFNGKLN ILINNAGTGK PGRTVEFTAE
101: EFSSIMAVNF EFVYHLCQLA HPLLKASGAG SIVLMSSVAG VVSLKYLSAY GATKGALNQL AKSLACEWAQ DNIRANSIAP WFIKTSLVEP FLSKKSFTEE
201: VIRRTPLGRV GDPKEVSSLV AFLCLPASSY ITGQTICVDG GMSINCFDPS QC
101: EFSSIMAVNF EFVYHLCQLA HPLLKASGAG SIVLMSSVAG VVSLKYLSAY GATKGALNQL AKSLACEWAQ DNIRANSIAP WFIKTSLVEP FLSKKSFTEE
201: VIRRTPLGRV GDPKEVSSLV AFLCLPASSY ITGQTICVDG GMSINCFDPS QC
001: MDKRWSLQGM NALVTGGTKG IGEAVVEELS ILGARVHTCA RDETQLQERL REWQEKGFQV TTSICDVSLR EQREKLMETV SSLFQGKLNI LVNNVGTLML
101: KPTTEYTAEE FSFLMATNLD SAFHISQLAH PLLKASGSGS IVLMSSIAGV VHVGVGSIYG ATKGAMNQLA RNLACEWASD NIRTNAICPW LITTPLISDL
201: LSVEEMKKEA EERTPMGRVG EANEVSPLVA FLCLPAASYI TGQVICVDGG LTVNGFSYQP HA
101: KPTTEYTAEE FSFLMATNLD SAFHISQLAH PLLKASGSGS IVLMSSIAGV VHVGVGSIYG ATKGAMNQLA RNLACEWASD NIRTNAICPW LITTPLISDL
201: LSVEEMKKEA EERTPMGRVG EANEVSPLVA FLCLPAASYI TGQVICVDGG LTVNGFSYQP HA
Arabidopsis Description
Tropinone reductase homolog At2g29290 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZW13]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.