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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 3
  • peroxisome 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
PPI

Inferred distinct locusB in Crop

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY06260 Canola plastid 97.33 97.33
AT1G07450.1 Thale cress cytosol, nucleus, peroxisome 83.97 84.62
CDY68057 Canola cytosol 79.39 79.39
CDX86486 Canola cytosol, peroxisome, plastid 79.01 79.01
CDX86485 Canola cytosol, peroxisome, plastid 76.72 76.72
CDX83306 Canola plastid 71.76 71.76
CDY40186 Canola cytosol 56.49 71.5
CDX95753 Canola cytosol, peroxisome, plastid 70.99 70.99
CDY31773 Canola plastid 70.61 70.61
CDY31768 Canola cytosol, peroxisome, plastid 70.23 70.23
CDY45432 Canola cytosol 69.85 69.85
CDY40179 Canola cytosol, peroxisome, plastid 69.47 69.73
CDY45438 Canola cytosol 69.47 69.47
CDY31772 Canola cytosol, peroxisome, plastid 69.08 69.08
CDY40188 Canola cytosol, peroxisome, plasma membrane 69.08 69.08
CDX83307 Canola peroxisome 69.08 69.08
CDY45441 Canola cytosol 58.78 68.75
CDX97899 Canola peroxisome 68.32 68.32
CDY40165 Canola plastid 68.32 68.32
CDX95751 Canola peroxisome 68.32 68.32
CDY45435 Canola cytosol, peroxisome, plastid 67.94 67.94
CDY40182 Canola cytosol, peroxisome, plastid 67.94 67.94
CDY62820 Canola cytosol, endoplasmic reticulum, peroxisome 67.94 67.68
CDY40183 Canola plastid 67.56 67.56
CDY45434 Canola cytosol, nucleus, plastid 67.56 67.56
CDX97897 Canola cytosol, extracellular 59.54 67.53
CDY06706 Canola mitochondrion 68.32 67.29
CDY52942 Canola mitochondrion 67.94 66.92
CDY10276 Canola mitochondrion 67.94 66.92
CDY14610 Canola mitochondrion 67.94 66.92
CDY31774 Canola cytosol 59.92 66.81
CDY16437 Canola mitochondrion 67.56 66.54
CDY40185 Canola plastid 66.41 66.41
CDY40175 Canola plasma membrane 66.41 66.41
CDX98899 Canola peroxisome 66.41 66.41
CDX97895 Canola cytosol 59.54 66.38
VIT_06s0004g05320.t01 Wine grape endoplasmic reticulum, peroxisome, plastid 63.36 65.87
VIT_06s0004g05400.t01 Wine grape cytosol 27.86 65.77
CDY04977 Canola peroxisome 65.65 65.4
CDY64214 Canola mitochondrion 42.37 64.91
CDY14094 Canola peroxisome 64.89 64.64
VIT_06s0004g05310.t01 Wine grape cytosol 27.86 64.6
CDY45433 Canola cytosol 60.31 64.49
Solyc03g096650.1.1 Tomato cytosol 21.76 64.04
CDY09823 Canola peroxisome 66.03 63.84
CDY09824 Canola mitochondrion 65.65 63.47
CDY31776 Canola cytosol, peroxisome, plastid 65.65 63.47
CDX97893 Canola mitochondrion 65.65 63.47
VIT_06s0004g05440.t01 Wine grape cytosol 19.85 63.41
CDY04975 Canola mitochondrion 27.1 63.39
CDX70101 Canola peroxisome 63.36 63.36
CDY31770 Canola plastid 55.34 62.5
CDY40171 Canola cytosol 52.67 62.44
CDY72061 Canola cytosol 25.95 62.39
VIT_06s0004g05370.t01 Wine grape peroxisome 59.92 62.3
VIT_06s0004g05380.t01 Wine grape plastid 64.12 62.22
CDY16436 Canola endoplasmic reticulum, vacuole 24.81 61.9
VIT_06s0004g05430.t01 Wine grape mitochondrion, nucleus, peroxisome 63.36 61.48
KRH24731 Soybean nucleus 62.6 61.42
VIT_06s0004g05330.t01 Wine grape peroxisome 58.4 60.24
KRH24733 Soybean nucleus 60.69 60.0
CDX95750 Canola cytosol 62.6 59.85
CDX95752 Canola cytosol 54.2 59.66
KRH24732 Soybean cytosol, endoplasmic reticulum, plastid 59.92 58.36
CDY51372 Canola plastid 61.83 58.06
CDY40177 Canola cytosol 59.92 56.68
VIT_06s0004g05360.t01 Wine grape cytosol, mitochondrion, plastid 51.53 56.25
VIT_06s0004g05390.t01 Wine grape cytosol, plasma membrane, plastid 50.38 53.66
KRH29740 Soybean cytosol 19.85 53.06
VIT_06s0004g05450.t01 Wine grape plasma membrane 35.88 52.22
CDY35991 Canola plastid 24.43 51.61
CDX98898 Canola cytosol, peroxisome, plasma membrane 59.54 50.32
CDX97890 Canola cytosol 62.21 48.08
GSMUA_Achr5P04570_001 Banana cytosol 22.9 47.24
CDY65683 Canola cytosol, mitochondrion 69.47 45.61
CDY35231 Canola peroxisome 16.79 35.48
CDY31767 Canola plastid 69.85 32.5
CDY16690 Canola peroxisome 31.3 32.16
CDX94534 Canola peroxisome 30.92 31.76
CDX76382 Canola cytosol, mitochondrion, peroxisome 30.15 30.74
CDY27447 Canola cytosol, mitochondrion, peroxisome 30.15 30.62
CDY27781 Canola cytosol, peroxisome, plastid 28.63 25.95
CDY43488 Canola cytosol 28.24 25.61
CDY50145 Canola plastid 69.85 25.28
CDY17559 Canola cytoskeleton, nucleus, peroxisome 27.1 24.74
CDY05152 Canola cytosol 22.14 24.27
CDX73802 Canola peroxisome 25.19 22.15
CDY00799 Canola peroxisome 25.19 22.15
CDY08402 Canola cytosol 24.81 22.11
CDY05153 Canola cytosol, nucleus, plastid 4.2 15.71
Protein Annotations
Gene3D:3.40.50.720MapMan:50.1.1GO:A0A078FA34UniProt:A0A078FA34EnsemblPlants:CDY09917ProteinID:CDY09917
ProteinID:CDY09917.1GO:GO:0003674GO:GO:0003824GO:GO:0008150GO:GO:0008152GO:GO:0016491
GO:GO:0055114EnsemblPlantsGene:GSBRNA2T00031681001InterPro:NAD(P)-bd_dom_sfPFAM:PF13561PRINTS:PR00080PRINTS:PR00081
ScanProsite:PS00061PANTHER:PTHR42898PANTHER:PTHR42898:SF7InterPro:SDR_famSUPFAM:SSF51735InterPro:Sc_DH/Rdtase_CS
UniParc:UPI0004EBD8C8SEG:seg::::
Description
BnaC08g45340DBnaC08g45340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FA34]
Coordinates
chrLK032000:+:62486..63706
Molecular Weight (calculated)
28127.7 Da
IEP (calculated)
5.730
GRAVY (calculated)
0.123
Length
262 amino acids
Sequence
(BLAST)
001: MDINMWSLQC MTALVTGGTK GIGYAIVEEL ASFGARVHTC DIDQTLLDEC LSEWQSKGFQ VSGSVCDVTS RPQREQLMQT VSSLFGSKLN ILVNNVGKFM
101: LKPTLESTAE DFSSLMSTNL ESAYHISQLA HPLLKVSGNG SIIFISSVSG IVSGTASVYG ATKGAMNQLG RNLACEWASD GIRVNSVAPW VTATSLVKKY
201: LDDKKFAEAM FSRTPLGRAC EPREVASLVT FLCLPAASYI TGQTICVDGG FTVNGFSYKP EA
Best Arabidopsis Sequence Match ( AT1G07450.1 )
(BLAST)
001: MDINRWSLQG MTALVTGGSK GIGYAIVEEL VGFGARVHIC DIDETLLNEC LSGWHAKGFE VSGSICDVSS RPQRVQLMQT VSSLFGAKLN ILINNVGKYI
101: LKPTLESTAE DFSSLMATNL ESAYYISQLA HPLLKASGNG NIVFISSVTG VVSGTSTIYG VTKGALNQLA RDLACEWASD NIRANSVAPW VTATSLVQKY
201: LEDEIFAEAM FSRTPLGRAC EPREVASLVT FLCLPAASYI TGQTICIDGG FTVNGFSYKP
Arabidopsis Description
Tropinone reductase homolog At1g07450 [Source:UniProtKB/Swiss-Prot;Acc:Q8RX32]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.