Factsheet for VIT_06s0004g05400.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0004g05310.t01
VIT_06s0004g05320.t01
VIT_06s0004g05330.t01
VIT_06s0004g05360.t01
VIT_06s0004g05370.t01
VIT_06s0004g05380.t01
VIT_06s0004g05390.t01
VIT_06s0004g05400.t01
VIT_06s0004g05430.t01
VIT_06s0004g05440.t01
VIT_06s0004g05450.t01
VIT_12s0028g02240.t01
VIT_13s0019g02130.t01
VIT_13s0019g02140.t01
VIT_13s0019g02170.t01
VIT_13s0019g02180.t01
VIT_18s0001g09830.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07440.1	VIT_06s0004g05310.t01	AT2G29310.1	21798944
AT1G07440.1	VIT_06s0004g05320.t01	AT2G29310.1	21798944
AT1G07440.1	VIT_06s0004g05330.t01	AT2G29310.1	21798944
AT1G07440.1	VIT_06s0004g05360.t01	AT2G29310.1	21798944
AT1G07440.1	VIT_06s0004g05370.t01	AT2G29310.1	21798944
AT1G07440.1	VIT_06s0004g05380.t01	AT2G29310.1	21798944
AT1G07440.1	VIT_06s0004g05390.t01	AT2G29310.1	21798944
AT1G07440.1	VIT_06s0004g05400.t01	AT2G29310.1	21798944
AT1G07440.1	VIT_06s0004g05430.t01	AT2G29310.1	21798944
AT1G07440.1	VIT_06s0004g05440.t01	AT2G29310.1	21798944
AT1G07440.1	VIT_06s0004g05450.t01	AT2G29310.1	21798944
AT1G07450.1	VIT_06s0004g05310.t01	AT2G29320.1	21798944
AT1G07450.1	VIT_06s0004g05320.t01	AT2G29320.1	21798944
AT1G07450.1	VIT_06s0004g05330.t01	AT2G29320.1	21798944
AT1G07450.1	VIT_06s0004g05360.t01	AT2G29320.1	21798944
AT1G07450.1	VIT_06s0004g05370.t01	AT2G29320.1	21798944
AT1G07450.1	VIT_06s0004g05380.t01	AT2G29320.1	21798944
AT1G07450.1	VIT_06s0004g05390.t01	AT2G29320.1	21798944
AT1G07450.1	VIT_06s0004g05400.t01	AT2G29320.1	21798944
AT1G07450.1	VIT_06s0004g05430.t01	AT2G29320.1	21798944
AT1G07450.1	VIT_06s0004g05440.t01	AT2G29320.1	21798944
AT1G07450.1	VIT_06s0004g05450.t01	AT2G29320.1	21798944
AT1G07450.1	VIT_06s0004g05310.t01	AT2G29350.1	21798944
AT1G07450.1	VIT_06s0004g05320.t01	AT2G29350.1	21798944
AT1G07450.1	VIT_06s0004g05330.t01	AT2G29350.1	21798944
AT1G07450.1	VIT_06s0004g05360.t01	AT2G29350.1	21798944
AT1G07450.1	VIT_06s0004g05370.t01	AT2G29350.1	21798944
AT1G07450.1	VIT_06s0004g05380.t01	AT2G29350.1	21798944
AT1G07450.1	VIT_06s0004g05390.t01	AT2G29350.1	21798944
AT1G07450.1	VIT_06s0004g05400.t01	AT2G29350.1	21798944
AT1G07450.1	VIT_06s0004g05430.t01	AT2G29350.1	21798944
AT1G07450.1	VIT_06s0004g05440.t01	AT2G29350.1	21798944
AT1G07450.1	VIT_06s0004g05450.t01	AT2G29350.1	21798944
AT2G29310.1	VIT_06s0004g05310.t01	AT1G07450.1	21798944
AT2G29310.1	VIT_06s0004g05320.t01	AT1G07450.1	21798944
AT2G29310.1	VIT_06s0004g05330.t01	AT1G07450.1	21798944
AT2G29310.1	VIT_06s0004g05360.t01	AT1G07450.1	21798944
AT2G29310.1	VIT_06s0004g05370.t01	AT1G07450.1	21798944
AT2G29310.1	VIT_06s0004g05380.t01	AT1G07450.1	21798944
AT2G29310.1	VIT_06s0004g05390.t01	AT1G07450.1	21798944
AT2G29310.1	VIT_06s0004g05400.t01	AT1G07450.1	21798944
AT2G29310.1	VIT_06s0004g05430.t01	AT1G07450.1	21798944
AT2G29310.1	VIT_06s0004g05440.t01	AT1G07450.1	21798944
AT2G29310.1	VIT_06s0004g05450.t01	AT1G07450.1	21798944
AT2G29310.1	VIT_06s0004g05310.t01	AT2G29310.1	21798944
AT2G29310.1	VIT_06s0004g05320.t01	AT2G29310.1	21798944
AT2G29310.1	VIT_06s0004g05330.t01	AT2G29310.1	21798944
AT2G29310.1	VIT_06s0004g05360.t01	AT2G29310.1	21798944
AT2G29310.1	VIT_06s0004g05370.t01	AT2G29310.1	21798944
AT2G29310.1	VIT_06s0004g05380.t01	AT2G29310.1	21798944
AT2G29310.1	VIT_06s0004g05390.t01	AT2G29310.1	21798944
AT2G29310.1	VIT_06s0004g05400.t01	AT2G29310.1	21798944
AT2G29310.1	VIT_06s0004g05430.t01	AT2G29310.1	21798944
AT2G29310.1	VIT_06s0004g05440.t01	AT2G29310.1	21798944
AT2G29310.1	VIT_06s0004g05450.t01	AT2G29310.1	21798944
AT2G29320.1	VIT_06s0004g05310.t01	AT2G29310.1	21798944
AT2G29320.1	VIT_06s0004g05320.t01	AT2G29310.1	21798944
AT2G29320.1	VIT_06s0004g05330.t01	AT2G29310.1	21798944
AT2G29320.1	VIT_06s0004g05360.t01	AT2G29310.1	21798944
AT2G29320.1	VIT_06s0004g05370.t01	AT2G29310.1	21798944
AT2G29320.1	VIT_06s0004g05380.t01	AT2G29310.1	21798944
AT2G29320.1	VIT_06s0004g05390.t01	AT2G29310.1	21798944
AT2G29320.1	VIT_06s0004g05400.t01	AT2G29310.1	21798944
AT2G29320.1	VIT_06s0004g05430.t01	AT2G29310.1	21798944
AT2G29320.1	VIT_06s0004g05440.t01	AT2G29310.1	21798944
AT2G29320.1	VIT_06s0004g05450.t01	AT2G29310.1	21798944
AT2G29330.1	VIT_06s0004g05310.t01	AT2G29320.1	21798944
AT2G29330.1	VIT_06s0004g05320.t01	AT2G29320.1	21798944
AT2G29330.1	VIT_06s0004g05330.t01	AT2G29320.1	21798944
AT2G29330.1	VIT_06s0004g05360.t01	AT2G29320.1	21798944
AT2G29330.1	VIT_06s0004g05370.t01	AT2G29320.1	21798944
AT2G29330.1	VIT_06s0004g05380.t01	AT2G29320.1	21798944
AT2G29330.1	VIT_06s0004g05390.t01	AT2G29320.1	21798944
AT2G29330.1	VIT_06s0004g05400.t01	AT2G29320.1	21798944
AT2G29330.1	VIT_06s0004g05430.t01	AT2G29320.1	21798944
AT2G29330.1	VIT_06s0004g05440.t01	AT2G29320.1	21798944
AT2G29330.1	VIT_06s0004g05450.t01	AT2G29320.1	21798944
AT2G29340.1	VIT_12s0028g02240.t01	AT2G42580.1	19000166
AT2G29340.1	VIT_18s0001g09830.t01	AT2G42580.1	19000166
AT2G29350.1	VIT_06s0004g05310.t01	AT2G29310.1	21798944
AT2G29350.1	VIT_06s0004g05320.t01	AT2G29310.1	21798944
AT2G29350.1	VIT_06s0004g05330.t01	AT2G29310.1	21798944
AT2G29350.1	VIT_06s0004g05360.t01	AT2G29310.1	21798944
AT2G29350.1	VIT_06s0004g05370.t01	AT2G29310.1	21798944
AT2G29350.1	VIT_06s0004g05380.t01	AT2G29310.1	21798944
AT2G29350.1	VIT_06s0004g05390.t01	AT2G29310.1	21798944
AT2G29350.1	VIT_06s0004g05400.t01	AT2G29310.1	21798944
AT2G29350.1	VIT_06s0004g05430.t01	AT2G29310.1	21798944
AT2G29350.1	VIT_06s0004g05440.t01	AT2G29310.1	21798944
AT2G29350.1	VIT_06s0004g05450.t01	AT2G29310.1	21798944
AT2G29350.1	VIT_06s0004g05310.t01	AT2G29320.1	21798944
AT2G29350.1	VIT_06s0004g05320.t01	AT2G29320.1	21798944
AT2G29350.1	VIT_06s0004g05330.t01	AT2G29320.1	21798944
AT2G29350.1	VIT_06s0004g05360.t01	AT2G29320.1	21798944
AT2G29350.1	VIT_06s0004g05370.t01	AT2G29320.1	21798944
AT2G29350.1	VIT_06s0004g05380.t01	AT2G29320.1	21798944
AT2G29350.1	VIT_06s0004g05390.t01	AT2G29320.1	21798944
AT2G29350.1	VIT_06s0004g05400.t01	AT2G29320.1	21798944
AT2G29350.1	VIT_06s0004g05430.t01	AT2G29320.1	21798944
AT2G29350.1	VIT_06s0004g05440.t01	AT2G29320.1	21798944
AT2G29350.1	VIT_06s0004g05450.t01	AT2G29320.1	21798944
AT2G29350.1	VIT_06s0004g05310.t01	AT2G29350.1	21798944
AT2G29350.1	VIT_06s0004g05320.t01	AT2G29350.1	21798944
AT2G29350.1	VIT_06s0004g05330.t01	AT2G29350.1	21798944
AT2G29350.1	VIT_06s0004g05360.t01	AT2G29350.1	21798944
AT2G29350.1	VIT_06s0004g05370.t01	AT2G29350.1	21798944
AT2G29350.1	VIT_06s0004g05380.t01	AT2G29350.1	21798944
AT2G29350.1	VIT_06s0004g05390.t01	AT2G29350.1	21798944
AT2G29350.1	VIT_06s0004g05400.t01	AT2G29350.1	21798944
AT2G29350.1	VIT_06s0004g05430.t01	AT2G29350.1	21798944
AT2G29350.1	VIT_06s0004g05440.t01	AT2G29350.1	21798944
AT2G29350.1	VIT_06s0004g05450.t01	AT2G29350.1	21798944
AT2G29350.1	VIT_06s0004g05310.t01	AT2G29360.1	21798944
AT2G29350.1	VIT_06s0004g05320.t01	AT2G29360.1	21798944
AT2G29350.1	VIT_06s0004g05330.t01	AT2G29360.1	21798944
AT2G29350.1	VIT_06s0004g05360.t01	AT2G29360.1	21798944
AT2G29350.1	VIT_06s0004g05370.t01	AT2G29360.1	21798944
AT2G29350.1	VIT_06s0004g05380.t01	AT2G29360.1	21798944
AT2G29350.1	VIT_06s0004g05390.t01	AT2G29360.1	21798944
AT2G29350.1	VIT_06s0004g05400.t01	AT2G29360.1	21798944
AT2G29350.1	VIT_06s0004g05430.t01	AT2G29360.1	21798944
AT2G29350.1	VIT_06s0004g05440.t01	AT2G29360.1	21798944
AT2G29350.1	VIT_06s0004g05450.t01	AT2G29360.1	21798944
AT2G29350.1	VIT_13s0019g02130.t01	AT5G06060.1	21798944
AT2G29350.1	VIT_13s0019g02140.t01	AT5G06060.1	21798944
AT2G29350.1	VIT_13s0019g02170.t01	AT5G06060.1	21798944
AT2G29350.1	VIT_13s0019g02180.t01	AT5G06060.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g05310.t01	Wine grape	cytosol	95.5	93.81
VIT_06s0004g05440.t01	Wine grape	cytosol	66.67	90.24
Solyc03g096650.1.1	Tomato	cytosol	54.05	67.42
CDY72061	Canola	cytosol	56.76	57.8
AT2G29170.1	Thale cress	cytosol	54.05	56.07
KRH29740	Soybean	cytosol	42.34	47.96
GSMUA_Achr5P04570_001	Banana	cytosol	49.55	43.31
CDY64214	Canola	mitochondrion	64.86	42.11
VIT_06s0004g05320.t01	Wine grape	endoplasmic reticulum, peroxisome, plastid	95.5	42.06
Bra027962.1-P	Field mustard	cytosol	64.86	41.62
VIT_06s0004g05380.t01	Wine grape	plastid	96.4	39.63
VIT_06s0004g05430.t01	Wine grape	mitochondrion, nucleus, peroxisome	93.69	38.52
VIT_06s0004g05330.t01	Wine grape	peroxisome	86.49	37.8
VIT_06s0004g05390.t01	Wine grape	cytosol, plasma membrane, plastid	76.58	34.55
VIT_06s0004g05370.t01	Wine grape	peroxisome	76.58	33.73
VIT_06s0004g05360.t01	Wine grape	cytosol, mitochondrion, plastid	72.07	33.33
CDY40171	Canola	cytosol	62.16	31.22
VIT_08s0007g00890.t01	Wine grape	peroxisome	67.57	30.0
CDY31770	Canola	plastid	62.16	29.74
CDY31774	Canola	cytosol	62.16	29.36
VIT_08s0007g00900.t01	Wine grape	mitochondrion, plastid	68.47	29.01
VIT_06s0004g05280.t01	Wine grape	cytosol, nucleus, peroxisome	65.77	28.97
CDX97895	Canola	cytosol	61.26	28.94
CDX97893	Canola	mitochondrion	70.27	28.78
CDY09823	Canola	peroxisome	70.27	28.78
CDY09824	Canola	mitochondrion	70.27	28.78
AT2G29150.1	Thale cress	peroxisome	69.37	28.73
VIT_13s0019g02180.t01	Wine grape	peroxisome, plasma membrane, plastid	69.37	28.73
Bra030683.1-P	Field mustard	cytosol, mitochondrion, plastid	67.57	28.63
CDY40186	Canola	cytosol	53.15	28.5
AT1G07450.1	Thale cress	cytosol, nucleus, peroxisome	66.67	28.46
AT2G29350.1	Thale cress	plastid	68.47	28.25
AT2G29290.2	Thale cress	plastid	66.67	28.24
CDX86486	Canola	cytosol, peroxisome, plastid	66.67	28.24
CDY68057	Canola	cytosol	66.67	28.24
AT2G29360.1	Thale cress	cytosol	68.47	28.04
Bra039976.1-P	Field mustard	cytosol	68.47	28.04
CDY31776	Canola	cytosol, peroxisome, plastid	68.47	28.04
AT2G29370.1	Thale cress	peroxisome	67.57	27.99
CDY09917	Canola	cytosol	65.77	27.86
VIT_08s0007g00920.t01	Wine grape	peroxisome	66.67	27.72
CDX86485	Canola	cytosol, peroxisome, plastid	64.86	27.48
Bra039755.1-P	Field mustard	mitochondrion	65.77	27.44
CDY16437	Canola	mitochondrion	65.77	27.44
CDY52942	Canola	mitochondrion	65.77	27.44
CDX95750	Canola	cytosol	67.57	27.37
Bra018393.1-P	Field mustard	cytosol	63.96	27.1
Bra031575.1-P	Field mustard	plastid	63.96	27.1
CDY06260	Canola	plastid	63.96	27.1
Bra015580.1-P	Field mustard	mitochondrion	64.86	27.07
CDY06706	Canola	mitochondrion	64.86	27.07
VIT_13s0019g02170.t01	Wine grape	mitochondrion, nucleus, peroxisome, plastid	69.37	27.02
CDY45433	Canola	cytosol	59.46	26.94
VIT_13s0019g02140.t01	Wine grape	peroxisome	65.77	26.94
CDX95752	Canola	cytosol	57.66	26.89
AT2G30670.1	Thale cress	cytosol, nucleus, peroxisome	63.06	26.72
CDY45434	Canola	cytosol, nucleus, plastid	63.06	26.72
AT1G07440.1	Thale cress	mitochondrion	63.96	26.69
CDY62820	Canola	cytosol, endoplasmic reticulum, peroxisome	63.06	26.62
VIT_13s0019g02130.t01	Wine grape	peroxisome	63.96	26.49
CDY40179	Canola	cytosol, peroxisome, plastid	62.16	26.44
Bra018396.1-P	Field mustard	cytosol	62.16	26.34
Bra018400.1-P	Field mustard	cytosol, nucleus, plastid	62.16	26.34
CDY40183	Canola	plastid	62.16	26.34
CDY45438	Canola	cytosol	62.16	26.34
CDY10276	Canola	mitochondrion	63.06	26.32
CDY14610	Canola	mitochondrion	63.06	26.32
Bra039969.1-P	Field mustard	cytosol	62.16	26.24
Bra018401.1-P	Field mustard	cytosol	59.46	26.09
AT2G29310.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	61.26	25.95
CDY40165	Canola	plastid	61.26	25.95
CDY40188	Canola	cytosol, peroxisome, plasma membrane	61.26	25.95
CDY45432	Canola	cytosol	61.26	25.95
KRH24731	Soybean	nucleus	62.16	25.84
CDY51372	Canola	plastid	64.86	25.81
AT2G29330.1	Thale cress	cytosol, peroxisome, plastid	60.36	25.77
KRH24733	Soybean	nucleus	61.26	25.66
Bra018391.1-P	Field mustard	cytosol	60.36	25.57
CDY40185	Canola	plastid	60.36	25.57
Bra039974.1-P	Field mustard	cytosol, plasma membrane, plastid	60.36	25.48
CDY40177	Canola	cytosol	63.06	25.27
Bra039513.1-P	Field mustard	peroxisome	59.46	25.19
CDX97899	Canola	peroxisome	59.46	25.19
CDY31772	Canola	cytosol, peroxisome, plastid	59.46	25.19
CDY40175	Canola	plasma membrane	59.46	25.19
AT2G29320.1	Thale cress	mitochondrion	60.36	24.91
KRH24732	Soybean	cytosol, endoplasmic reticulum, plastid	60.36	24.91
Bra000477.1-P	Field mustard	plastid	58.56	24.81
Bra018405.1-P	Field mustard	cytosol	58.56	24.81
Bra039973.1-P	Field mustard	plastid	58.56	24.81
CDX83306	Canola	plastid	58.56	24.81
CDX83307	Canola	peroxisome	58.56	24.81
CDX95753	Canola	cytosol, peroxisome, plastid	58.56	24.81
Bra000476.1-P	Field mustard	cytosol, peroxisome, plastid	57.66	24.43
Bra039514.1-P	Field mustard	cytosol, peroxisome, plastid	57.66	24.43
Bra039971.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	57.66	24.43
CDX95751	Canola	peroxisome	57.66	24.43
CDY31773	Canola	plastid	57.66	24.43
AT2G29300.2	Thale cress	extracellular	62.16	24.13
CDY31768	Canola	cytosol, peroxisome, plastid	56.76	24.05
CDY40182	Canola	cytosol, peroxisome, plastid	56.76	24.05
Bra018399.1-P	Field mustard	cytosol, peroxisome, plastid	55.86	23.66
Bra039967.1-P	Field mustard	plastid	55.86	23.66
CDY45435	Canola	cytosol, peroxisome, plastid	55.86	23.66
AT2G29340.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	58.56	21.17
CDY45441	Canola	cytosol	42.34	20.98
CDX97890	Canola	cytosol	63.96	20.94
Bra039966.1-P	Field mustard	cytosol	54.05	20.83
Bra018402.1-P	Field mustard	cytosol	38.74	19.63
CDY65683	Canola	cytosol, mitochondrion	65.77	18.3
CDX97897	Canola	cytosol, extracellular	36.04	17.32
Bra027961.1-P	Field mustard	cytosol	46.85	17.16
Bra039977.1-P	Field mustard	plastid	26.13	15.03
VIT_06s0004g05450.t01	Wine grape	plasma membrane	22.52	13.89
CDY31767	Canola	plastid	66.67	13.14
Bra018404.1-P	Field mustard	cytosol	20.72	12.37
VIT_19s0085g00500.t01	Wine grape	peroxisome	31.53	11.78
VIT_01s0011g01520.t01	Wine grape	peroxisome	30.63	11.45
VIT_14s0128g00340.t01	Wine grape	plastid	29.73	9.68
CDY50145	Canola	plastid	56.76	8.7
VIT_00s0516g00030.t01	Wine grape	cytosol, peroxisome	34.23	3.69
CDY16436	Canola	endoplasmic reticulum, vacuole	0.0	0.0
VIT_17s0000g08740.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

ArrayExpress:VIT_06s0004g05400	EMBL:FN594951	EnsemblPlants:VIT_06s0004g05400.t01	EnsemblPlantsGene:VIT_06s0004g05400	Gene3D:3.40.50.720	InterPro:NAD(P)-bd_dom_sf
InterPro:SDR_fam	PANTHER:PTHR42898	PFAM:PF00106	PRINTS:PR00081	ProteinID:CBI16062	ProteinID:CBI16062.3
RefSeq:XP_003632142	RefSeq:XP_003632142.1	SUPFAM:SSF51735	UniParc:UPI0001BE0DDA	UniProt:D7SK86	MapMan:50.1.1

Description

No Description!

Coordinates

chr6:+:6257291..6257928

Molecular Weight (calculated)

11820.4 Da

IEP (calculated)

7.349

GRAVY (calculated)

0.147

Length

111 amino acids

Sequence
(BLAST)

001: MTALVTGGTK GIGHAIVEEL AGLGATIHTC SRKETELNEC LKDWKAKGFG VSGSVCDVSS RAQREKLMET VSSVFNGKLN ILVNNAAIVI QKPTVEVKAE
101: EFSTIMAINL I

Best Arabidopsis Sequence Match ( AT1G07440.2 )
(BLAST)

001: MAGAEQSQRW SLKAKTVLVT GGTKGIGHAI VEEFAGFGAV IHTCARNEYE LNECLSKWQK KGFQVTGSVC DASLRPEREK LMQTVSSMFG GKLDILINNL
101: GAIRSKPTLD YTAEDFSFHI STNLESAYHL SQLAHPLLKA SGCGNIIFMS SIAGVVSASV GSIYSATKGL YTNY

Arabidopsis Description

Tropinone reductase homolog At1g07440 [Source:UniProtKB/Swiss-Prot;Acc:P0DKI3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.