CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31768	Canola	cytosol, peroxisome, plastid	34.81	96.18
CDY31773	Canola	plastid	32.6	90.08
CDX97897	Canola	cytosol, extracellular	28.18	88.31
CDY31772	Canola	cytosol, peroxisome, plastid	31.63	87.4
CDX97899	Canola	peroxisome	31.49	87.02
CDY40188	Canola	cytosol, peroxisome, plasma membrane	31.08	85.88
CDY45432	Canola	cytosol	30.8	85.11
CDX83307	Canola	peroxisome	30.66	84.73
CDY40186	Canola	cytosol	24.03	84.06
CDX83306	Canola	plastid	30.39	83.97
CDX95751	Canola	peroxisome	30.39	83.97
CDX95753	Canola	cytosol, peroxisome, plastid	29.83	82.44
CDY40185	Canola	plastid	29.7	82.06
CDY40182	Canola	cytosol, peroxisome, plastid	29.56	81.68
CDY45435	Canola	cytosol, peroxisome, plastid	29.28	80.92
CDY40175	Canola	plasma membrane	29.01	80.15
CDX97895	Canola	cytosol	25.69	79.15
CDY31774	Canola	cytosol	25.69	79.15
CDY45433	Canola	cytosol	26.66	78.78
CDY45438	Canola	cytosol	28.31	78.24
CDY40179	Canola	cytosol, peroxisome, plastid	28.18	78.16
CDY45434	Canola	cytosol, nucleus, plastid	28.18	77.86
CDY62820	Canola	cytosol, endoplasmic reticulum, peroxisome	28.18	77.57
CDY40165	Canola	plastid	27.9	77.1
CDY40183	Canola	plastid	27.9	77.1
CDY40171	Canola	cytosol	23.34	76.47
CDY45441	Canola	cytosol	23.62	76.34
CDY31770	Canola	plastid	23.48	73.28
CDX86486	Canola	cytosol, peroxisome, plastid	26.24	72.52
CDY68057	Canola	cytosol	25.69	70.99
CDX95752	Canola	cytosol	23.2	70.59
CDY09917	Canola	cytosol	25.28	69.85
CDY52942	Canola	mitochondrion	25.14	68.42
CDY06260	Canola	plastid	24.72	68.32
CDY06706	Canola	mitochondrion	25.0	68.05
CDX86485	Canola	cytosol, peroxisome, plastid	24.59	67.94
CDY16437	Canola	mitochondrion	24.86	67.67
CDY14610	Canola	mitochondrion	24.86	67.67
CDY10276	Canola	mitochondrion	24.86	67.67
CDY40177	Canola	cytosol	25.28	66.06
CDY64214	Canola	mitochondrion	15.33	64.91
CDY16436	Canola	endoplasmic reticulum, vacuole	9.25	63.81
CDY04977	Canola	peroxisome	22.93	63.12
CDX98899	Canola	peroxisome	22.65	62.6
CDY04975	Canola	mitochondrion	9.67	62.5
CDY14094	Canola	peroxisome	22.65	62.36
VIT_06s0004g05320.t01	Wine grape	endoplasmic reticulum, peroxisome, plastid	21.41	61.51
CDX70101	Canola	peroxisome	22.24	61.45
CDX97893	Canola	mitochondrion	22.93	61.25
CDY09824	Canola	mitochondrion	22.93	61.25
KRH24733	Soybean	nucleus	22.24	60.75
Solyc03g096650.1.1	Tomato	cytosol	7.46	60.67
CDY31776	Canola	cytosol, peroxisome, plastid	22.65	60.52
VIT_06s0004g05380.t01	Wine grape	plastid	22.51	60.37
VIT_06s0004g05370.t01	Wine grape	peroxisome	20.99	60.32
CDY09823	Canola	peroxisome	22.51	60.15
VIT_06s0004g05430.t01	Wine grape	mitochondrion, nucleus, peroxisome	22.38	60.0
KRH24731	Soybean	nucleus	22.1	59.93
CDX95750	Canola	cytosol	22.38	59.12
VIT_06s0004g05330.t01	Wine grape	peroxisome	20.03	57.09
CDY51372	Canola	plastid	21.96	56.99
VIT_06s0004g05400.t01	Wine grape	cytosol	8.7	56.76
KRH24732	Soybean	cytosol, endoplasmic reticulum, plastid	20.99	56.51
CDY35991	Canola	plastid	9.67	56.45
VIT_06s0004g05440.t01	Wine grape	cytosol	6.35	56.1
CDY72061	Canola	cytosol	8.29	55.05
VIT_06s0004g05310.t01	Wine grape	cytosol	8.56	54.87
VIT_06s0004g05360.t01	Wine grape	cytosol, mitochondrion, plastid	17.96	54.17
VIT_06s0004g05390.t01	Wine grape	cytosol, plasma membrane, plastid	17.4	51.22
VIT_06s0004g05450.t01	Wine grape	plasma membrane	12.57	50.56
KRH29740	Soybean	cytosol	6.77	50.0
CDX98898	Canola	cytosol, peroxisome, plasma membrane	20.86	48.71
CDX97890	Canola	cytosol	22.1	47.2
GSMUA_Achr5P04570_001	Banana	cytosol	8.15	46.46
CDY65683	Canola	cytosol, mitochondrion	24.59	44.61
CDY31767	Canola	plastid	30.94	39.79
CDY35231	Canola	peroxisome	6.22	36.29
CDY16690	Canola	peroxisome	10.64	30.2
CDX94534	Canola	peroxisome	10.5	29.8
CDX76382	Canola	cytosol, mitochondrion, peroxisome	10.36	29.18
CDY27447	Canola	cytosol, mitochondrion, peroxisome	10.36	29.07
CDY43488	Canola	cytosol	10.5	26.3
CDY27781	Canola	cytosol, peroxisome, plastid	10.36	25.95
CDY17559	Canola	cytoskeleton, nucleus, peroxisome	10.22	25.78
CDY05152	Canola	cytosol	7.73	23.43
CDY08402	Canola	cytosol	9.39	23.13
CDY05153	Canola	cytosol, nucleus, plastid	2.21	22.86
CDY00799	Canola	peroxisome	9.25	22.48
CDX73802	Canola	peroxisome	9.25	22.48

Protein Annotations

EnsemblPlants:CDY50145	EnsemblPlantsGene:GSBRNA2T00095976001	Gene3D:3.40.50.720	GO:A0A078IGW7	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:NAD(P)-bd_dom_sf	InterPro:SDR_fam	PANTHER:PTHR42898	PANTHER:PTHR42898:SF2	PFAM:PF00106
PFAM:PF13561	PRINTS:PR00080	PRINTS:PR00081	ProteinID:CDY50145	ProteinID:CDY50145.1	SEG:seg
SUPFAM:SSF51735	TMHMM:TMhelix	UniParc:UPI0004EEAEA0	UniProt:A0A078IGW7	MapMan:50.1.1	:

Description

BnaC04g40340DBnaC04g40340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IGW7]

Coordinates

chrLK032884:+:83774..90601

Molecular Weight (calculated)

78583.9 Da

IEP (calculated)

8.686

GRAVY (calculated)

0.154

Length

724 amino acids

Sequence
(BLAST)

001: MASRLYTNSP QNLYFLASPT KPRSFKSSVI VRCASIATSP NRWSLHGMSA LVTGGTRGIG RAIVEELVCL GARVHTCARN ETELKDCLRD WNRSGFQVDG
101: WVCDVSDRAQ RESLMETVSS LFRGKLHILV NNVGTNIRKP MVDFTPEEFS TLLSTNFESV FHLCQLAYPM LRATEAGCVV SISSVSGFVS LKNMSVQSAT
201: KGAINQLTRN LACEWAKDNI RVNAVAPWYI KTSMVEQVLS NKDYLDEVYS VTPLGRLGEP REVSSAVAFL CLPASSYITG QISIDGSRGC CYYPSYALVD
301: CFFFVTFASR WSLQGITALV TGGARGIGFV FLLRSLYITI LPTVLLLLNI LTVQRFQVSG SACDVSSRPE RETLMQTVSS LFDGKLNVLV SNLIFNKPIK
401: LSLFLRAKLL KTQLVEPSQL SHPLLKASGS GSIVFISSIA GVVPAANYVS IYSATKEKKK RKMDKRWSLQ GMTALVTGGA SGIGYAIVEE LASFGARIHV
501: CDISKTLLNQ SLSEWEKKGF QVSGSVCDVT SRPEGETLIQ KVSSLFDGKL NIFVNNVGVL RGKPTTEYGA DDFAFHISTN LESAYHFCQL SHPLLKASGY
601: GSIVFLSSVA GVVSTSGGSI YSLTKGALNQ LARNLACEWA EDSIRANAVA PNIIKTPLAL PYLEDVGFRE GLFGRTPLGR AGEPHEVASV VVFLCLPAAS
701: YITGQTICVD GGLTINGFSY QPHA

Best Arabidopsis Sequence Match ( AT2G29260.1 )
(BLAST)

001: MVLDMASHLY TNPPQNLHFI SSSSSLKPHL CLSFKRINPK HKSSSSSVFV PYASQSSIAI TSKERWSLNG MSALVTGGTR GIGRAIVEEL AGLGAEVHTC
101: ARNEYELENC LSDWNRSGFR VAGSVCDVSD RSQREALMET VSSVFEGKLH ILVNNVGTNI RKPMVEFTAG EFSTLMSTNF ESVFHLCQLA YPLLRESKAG
201: SVVFISSVSG FVSLKNMSVQ SSTKGAINQL TRSLACEWAK DNIRINAVAP WYIKTSMVEQ VLSNKEYLEE VYSVTPLGRL GEPREVSSAV AFLCLPASSY
301: ITGQILCVDG GMSINGFFPR HD

Arabidopsis Description

Tropinone reductase homolog At2g29260, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZW12]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.