Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- peroxisome 1
- mitochondrion 1
- plasma membrane 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G06060.1 | CDY40183 | AT2G29330.1 | 21798944 |
| AT5G06060.1 | CDY45434 | AT2G29330.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009159.1-P | Field mustard | cytosol, mitochondrion, peroxisome, plasma membrane | 76.77 | 90.84 |
| CDX70101 | Canola | peroxisome | 76.77 | 90.84 |
| CDX98899 | Canola | peroxisome | 69.03 | 81.68 |
| CDY14094 | Canola | peroxisome | 66.77 | 78.71 |
| CDY04977 | Canola | peroxisome | 66.45 | 78.33 |
| AT5G06060.1 | Thale cress | peroxisome | 66.45 | 78.03 |
| CDY04975 | Canola | mitochondrion | 25.81 | 71.43 |
| Solyc03g096640.2.1 | Tomato | mitochondrion, plastid | 53.87 | 62.31 |
| PGSC0003DMT400043159 | Potato | mitochondrion | 53.55 | 61.71 |
| VIT_13s0019g02180.t01 | Wine grape | peroxisome, plasma membrane, plastid | 53.23 | 61.57 |
| CDY09917 | Canola | cytosol | 50.32 | 59.54 |
| HORVU4Hr1G060350.3 | Barley | plastid | 51.94 | 59.19 |
| CDX86486 | Canola | cytosol, peroxisome, plastid | 50.0 | 59.16 |
| CDY68057 | Canola | cytosol | 50.0 | 59.16 |
| CDX86485 | Canola | cytosol, peroxisome, plastid | 49.68 | 58.78 |
| TraesCS4A01G094400.1 | Wheat | plastid | 51.29 | 58.46 |
| CDY06260 | Canola | plastid | 49.35 | 58.4 |
| CDY06706 | Canola | mitochondrion | 50.0 | 58.27 |
| TraesCS4B01G210000.1 | Wheat | plastid | 50.97 | 58.09 |
| CDY45434 | Canola | cytosol, nucleus, plastid | 49.03 | 58.02 |
| CDY10276 | Canola | mitochondrion | 49.68 | 57.89 |
| CDY14610 | Canola | mitochondrion | 49.68 | 57.89 |
| CDY52942 | Canola | mitochondrion | 49.68 | 57.89 |
| CDY64214 | Canola | mitochondrion | 31.94 | 57.89 |
| TraesCS4D01G210800.1 | Wheat | plastid | 50.65 | 57.72 |
| CDY31773 | Canola | plastid | 48.71 | 57.63 |
| CDY40183 | Canola | plastid | 48.71 | 57.63 |
| GSMUA_Achr10P... | Banana | cytosol | 50.32 | 57.56 |
| CDY31768 | Canola | cytosol, peroxisome, plastid | 48.39 | 57.25 |
| CDY16437 | Canola | mitochondrion | 49.03 | 57.14 |
| CDY31772 | Canola | cytosol, peroxisome, plastid | 48.06 | 56.87 |
| Zm00001d028575_P001 | Maize | extracellular | 50.0 | 56.78 |
| TraesCS4B01G209900.1 | Wheat | peroxisome | 49.35 | 56.67 |
| CDX83307 | Canola | peroxisome | 47.74 | 56.49 |
| CDX95751 | Canola | peroxisome | 47.74 | 56.49 |
| CDX97899 | Canola | peroxisome | 47.74 | 56.49 |
| CDY40175 | Canola | plasma membrane | 47.74 | 56.49 |
| CDY40188 | Canola | cytosol, peroxisome, plasma membrane | 47.74 | 56.49 |
| KRH31007 | Soybean | mitochondrion | 49.35 | 56.46 |
| Os03t0268900-02 | Rice | plastid | 49.03 | 56.3 |
| CDY62820 | Canola | cytosol, endoplasmic reticulum, peroxisome | 47.74 | 56.27 |
| CDX83306 | Canola | plastid | 47.42 | 56.11 |
| CDY45438 | Canola | cytosol | 47.42 | 56.11 |
| TraesCS4A01G094500.1 | Wheat | cytosol, peroxisome, plastid | 49.03 | 56.09 |
| CDY40186 | Canola | cytosol | 37.42 | 56.04 |
| PGSC0003DMT400043152 | Potato | peroxisome | 50.0 | 55.96 |
| CDX95753 | Canola | cytosol, peroxisome, plastid | 47.1 | 55.73 |
| CDY40165 | Canola | plastid | 47.1 | 55.73 |
| CDY45432 | Canola | cytosol | 47.1 | 55.73 |
| VIT_13s0019g02130.t01 | Wine grape | peroxisome | 48.06 | 55.6 |
| CDY40179 | Canola | cytosol, peroxisome, plastid | 46.77 | 55.56 |
| KRH31026 | Soybean | cytosol, mitochondrion, peroxisome, plastid | 48.71 | 55.51 |
| VIT_13s0019g02140.t01 | Wine grape | peroxisome | 48.39 | 55.35 |
| CDX97893 | Canola | mitochondrion | 48.06 | 54.98 |
| CDY09823 | Canola | peroxisome | 48.06 | 54.98 |
| CDY09824 | Canola | mitochondrion | 48.06 | 54.98 |
| CDX97897 | Canola | cytosol, extracellular | 40.97 | 54.98 |
| KRH31025 | Soybean | plastid | 49.03 | 54.87 |
| CDY40182 | Canola | cytosol, peroxisome, plastid | 46.13 | 54.58 |
| CDY45435 | Canola | cytosol, peroxisome, plastid | 46.13 | 54.58 |
| Solyc03g096660.1.1 | Tomato | extracellular | 34.19 | 54.36 |
| CDY31776 | Canola | cytosol, peroxisome, plastid | 47.42 | 54.24 |
| CDY40185 | Canola | plastid | 45.81 | 54.2 |
| CDY45441 | Canola | cytosol | 39.03 | 54.02 |
| Os03t0269000-01 | Rice | plastid | 37.1 | 53.99 |
| CDY51372 | Canola | plastid | 48.39 | 53.76 |
| KRG97856 | Soybean | mitochondrion, plastid | 47.1 | 53.68 |
| CDX95750 | Canola | cytosol | 47.42 | 53.65 |
| CDY40171 | Canola | cytosol | 37.42 | 52.49 |
| KRG97870 | Soybean | mitochondrion | 42.26 | 52.4 |
| CDX97895 | Canola | cytosol | 39.68 | 52.34 |
| CDY31774 | Canola | cytosol | 39.68 | 52.34 |
| CDY35991 | Canola | plastid | 20.32 | 50.81 |
| CDY45433 | Canola | cytosol | 40.0 | 50.61 |
| CDY16436 | Canola | endoplasmic reticulum, vacuole | 17.1 | 50.48 |
| KRG97857 | Soybean | mitochondrion | 40.32 | 50.0 |
| OQU92858 | Sorghum | cytosol, peroxisome, plastid | 49.68 | 50.0 |
| CDY72061 | Canola | cytosol | 17.42 | 49.54 |
| EES08074 | Sorghum | plastid | 48.06 | 49.5 |
| VIT_13s0019g02170.t01 | Wine grape | mitochondrion, nucleus, peroxisome, plastid | 45.16 | 49.12 |
| CDY31770 | Canola | plastid | 36.45 | 48.71 |
| TraesCS4D01G210700.1 | Wheat | plastid | 49.68 | 48.58 |
| Os03t0269100-02 | Rice | mitochondrion, plastid | 47.74 | 48.05 |
| CDX95752 | Canola | cytosol | 36.45 | 47.48 |
| KRH31021 | Soybean | mitochondrion | 46.13 | 47.19 |
| CDY40177 | Canola | cytosol | 41.94 | 46.93 |
| HORVU4Hr1G060330.1 | Barley | mitochondrion | 46.13 | 44.69 |
| CDX97890 | Canola | cytosol | 48.39 | 44.25 |
| OQU91956 | Sorghum | extracellular, peroxisome | 40.0 | 38.75 |
| CDY65683 | Canola | cytosol, mitochondrion | 49.68 | 38.6 |
| CDY35231 | Canola | peroxisome | 14.19 | 35.48 |
| CDY27447 | Canola | cytosol, mitochondrion, peroxisome | 27.42 | 32.95 |
| CDX76382 | Canola | cytosol, mitochondrion, peroxisome | 27.1 | 32.68 |
| CDY16690 | Canola | peroxisome | 26.45 | 32.16 |
| CDX94534 | Canola | peroxisome | 25.81 | 31.37 |
| CDY31767 | Canola | plastid | 50.97 | 28.06 |
| CDY43488 | Canola | cytosol | 23.87 | 25.61 |
| CDY17559 | Canola | cytoskeleton, nucleus, peroxisome | 23.55 | 25.44 |
| CDY27781 | Canola | cytosol, peroxisome, plastid | 23.23 | 24.91 |
| CDX73802 | Canola | peroxisome | 22.26 | 23.15 |
| CDY00799 | Canola | peroxisome | 21.94 | 22.82 |
| CDY08402 | Canola | cytosol | 21.61 | 22.79 |
| CDY05152 | Canola | cytosol | 17.1 | 22.18 |
| CDY05153 | Canola | cytosol, nucleus, plastid | 4.84 | 21.43 |
| CDY50145 | Canola | plastid | 48.71 | 20.86 |
Protein Annotations
| EnsemblPlants:CDX98898 | EnsemblPlantsGene:GSBRNA2T00107002001 | GO:A0A078EHS1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016491 | InterPro:NAD(P)-bd_dom_sf | InterPro:SDR_fam | InterPro:Sc_DH/Rdtase_CS | PANTHER:PTHR42898 |
| PANTHER:PTHR42898:SF7 | PFAM:PF00106 | PFAM:PF13561 | PRINTS:PR00081 | ProteinID:CDX98898 | ProteinID:CDX98898.1 |
| ScanProsite:PS00061 | SEG:seg | SUPFAM:SSF51735 | UniParc:UPI0004EE0CA0 | MapMan:50.1.1 | : |
Description
BnaC09g49370D
Coordinates
chrLK031907:-:477698..481909
Molecular Weight (calculated)
33546.6 Da
IEP (calculated)
6.510
GRAVY (calculated)
-0.141
Length
310 amino acids
Sequence
(BLAST)
(BLAST)
001: MESDKRWSLA GKTALVTGGT RGIGRAIVEE LARFGARVHT CSRNQEELKA CLDDWRSNDL KVSGSVCDAS DRGEREKLMQ QVSSAFSGKL NILREKRKGE
101: SSSELDAGAA AHQDVVITIN RSSRPSSCSS RRDETHLIPH WAILMSLTPP SFPLSVEYTS EDYAKVMSTN FESAFHFSQI AHPLLKASGV GSIVFVSSVA
201: GLVYASAGPI YGATKGGLNQ LTRNLACEWA CDNIRTNSVA PWYINTSFVE PVLENKEFMG AVVNRTPLGR VGEPEEVASL VAFLCLPAAS YITGQVIVAD
301: GGFFNYANEA
101: SSSELDAGAA AHQDVVITIN RSSRPSSCSS RRDETHLIPH WAILMSLTPP SFPLSVEYTS EDYAKVMSTN FESAFHFSQI AHPLLKASGV GSIVFVSSVA
201: GLVYASAGPI YGATKGGLNQ LTRNLACEWA CDNIRTNSVA PWYINTSFVE PVLENKEFMG AVVNRTPLGR VGEPEEVASL VAFLCLPAAS YITGQVIVAD
301: GGFFNYANEA
001: METDKRWSLA GKTALVTGGT RGIGRAVVEE LAKFGAKVHT CSRNQEELNA CLNDWKANGL VVSGSVCDAS VRDQREKLIQ EASSAFSGKL NILINNVGTN
101: VRKPTVEYSS EEYAKIMSTN LESAFHLSQI AHPLLKASGV GSIVFISSVA GLVHLSSGSI YGATKGALNQ LTRNLACEWA SDNIRTNCVA PWYIKTSLVE
201: TLLEKKEFVE AVVSRTPLGR VGEPEEVSSL VAFLCLPASS YITGQVISVD GGFTVNGFSY AMKP
101: VRKPTVEYSS EEYAKIMSTN LESAFHLSQI AHPLLKASGV GSIVFISSVA GLVHLSSGSI YGATKGALNQ LTRNLACEWA SDNIRTNCVA PWYIKTSLVE
201: TLLEKKEFVE AVVSRTPLGR VGEPEEVSSL VAFLCLPASS YITGQVISVD GGFTVNGFSY AMKP
Arabidopsis Description
Tropinone reductase homolog At5g06060 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHT0]
SUBAcon: [peroxisome]
SUBAcon: [peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.