Factsheet for Solyc03g096660.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 3
plastid 2
extracellular 5
golgi 3
plasma membrane 3
endoplasmic reticulum 3
vacuole 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g096650.1.1
Solyc06g075780.1.1
Solyc11g073060.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06060.1	Solyc03g096650.1.1	AT2G29330.1	21798944
AT5G06060.1	Solyc03g096650.1.1	AT2G29360.1	21798944
AT5G06060.1	Solyc06g075780.1.1	AT3G46090.1	17259181
AT5G06060.1	Solyc11g073060.1.1	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g083490.2.1	Tomato	cytosol, peroxisome, plastid	64.1	67.57
Solyc06g083480.2.1	Tomato	cytosol	42.56	64.34
CDY04975	Canola	mitochondrion	36.41	63.39
PGSC0003DMT400043152	Potato	peroxisome	87.18	61.37
Solyc03g096640.2.1	Tomato	mitochondrion, plastid	74.87	54.48
CDX98899	Canola	peroxisome	63.08	46.95
Bra028744.1-P	Field mustard	cytosol	62.56	46.39
CDY04977	Canola	peroxisome	62.56	46.39
AT5G06060.1	Thale cress	peroxisome	62.56	46.21
CDY14094	Canola	peroxisome	61.54	45.63
VIT_13s0019g02180.t01	Wine grape	peroxisome, plasma membrane, plastid	62.05	45.15
CDX70101	Canola	peroxisome	60.51	45.04
GSMUA_Achr10P...	Banana	cytosol	61.54	44.28
Bra009159.1-P	Field mustard	cytosol, mitochondrion, peroxisome, plasma membrane	59.49	44.27
Os03t0268900-02	Rice	plastid	58.46	42.22
TraesCS4A01G094500.1	Wheat	cytosol, peroxisome, plastid	58.46	42.07
Solyc06g083470.2.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	56.92	41.26
KRG97856	Soybean	mitochondrion, plastid	57.44	41.18
HORVU4Hr1G060350.3	Barley	plastid	57.44	41.18
TraesCS4B01G209900.1	Wheat	peroxisome	56.92	41.11
VIT_13s0019g02130.t01	Wine grape	peroxisome	55.9	40.67
KRH31007	Soybean	mitochondrion	56.41	40.59
VIT_13s0019g02140.t01	Wine grape	peroxisome	56.41	40.59
TraesCS4D01G210800.1	Wheat	plastid	56.41	40.44
TraesCS4B01G210000.1	Wheat	plastid	56.41	40.44
TraesCS4A01G094400.1	Wheat	plastid	56.41	40.44
KRG97870	Soybean	mitochondrion	51.79	40.4
Zm00001d028575_P001	Maize	extracellular	56.41	40.29
KRH31026	Soybean	cytosol, mitochondrion, peroxisome, plastid	55.9	40.07
Solyc09g011140.2.1	Tomato	cytosol	54.87	39.63
KRH31025	Soybean	plastid	55.38	38.99
Solyc09g011130.1.1	Tomato	plastid	52.31	38.78
Solyc06g005720.2.1	Tomato	plastid	57.95	37.54
Solyc04g007400.2.1	Tomato	cytosol	48.72	36.4
KRH31021	Soybean	mitochondrion	56.41	36.3
Solyc04g054950.2.1	Tomato	mitochondrion, peroxisome, plastid	48.72	36.12
TraesCS4D01G210700.1	Wheat	plastid	57.95	35.65
HORVU4Hr1G060330.1	Barley	mitochondrion	58.46	35.62
KRG97857	Soybean	mitochondrion	45.64	35.6
Os03t0269100-02	Rice	mitochondrion, plastid	55.9	35.39
Solyc10g081560.1.1	Tomato	cytosol, nucleus, peroxisome	47.69	35.23
VIT_13s0019g02170.t01	Wine grape	mitochondrion, nucleus, peroxisome, plastid	50.77	34.74
EES08074	Sorghum	plastid	52.82	34.22
CDX98898	Canola	cytosol, peroxisome, plasma membrane	54.36	34.19
OQU92858	Sorghum	cytosol, peroxisome, plastid	53.33	33.77
Os03t0269000-01	Rice	plastid	36.41	33.33
Solyc10g086620.1.1	Tomato	plastid	46.15	32.97
OQU91956	Sorghum	extracellular, peroxisome	48.21	29.38
Solyc04g014670.2.1	Tomato	plastid	27.69	21.34
Solyc07g066630.2.1	Tomato	plastid	24.62	16.05
Solyc01g098850.2.1	Tomato	extracellular	26.15	15.0
Solyc03g096650.1.1	Tomato	cytosol	5.13	11.24

Protein Annotations

Gene3D:3.40.50.720	MapMan:50.1.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0055114	UniProt:K4BJ84	InterPro:NAD(P)-bd_dom_sf	PFAM:PF13561	PRINTS:PR00080
PRINTS:PR00081	ScanProsite:PS00061	PANTHER:PTHR42898	PANTHER:PTHR42898:SF3	InterPro:SDR_fam	SUPFAM:SSF51735
InterPro:Sc_DH/Rdtase_CS	EnsemblPlantsGene:Solyc03g096660.1	EnsemblPlants:Solyc03g096660.1.1	TMHMM:TMhelix	UniParc:UPI0002767DE2	:

Description

No Description!

Coordinates

chr3:+:58977929..58978940

Molecular Weight (calculated)

21362.7 Da

IEP (calculated)

6.779

GRAVY (calculated)

0.193

Length

195 amino acids

Sequence
(BLAST)

001: MECVIPITNH LIWIEGVIFL HWSIYINNAG TNIRKPTIDY TGEEYAHLFG TNLESGYHIC QLAHPLLKAS EVGSVVFISS VAGLVHLSTS SIYAATKGAM
101: NQLTRDLACE WAKDNIRVNG VAPWYIKTSS VEYVIKNKTL LDGIKSRTPL MRPGEAQEVS SLVAYLCLPG ASYITGQVIA VDGGFTVNGF NFTSY

Best Arabidopsis Sequence Match ( AT2G29150.1 )
(BLAST)

001: MAKAGENSRD KSRWSLEGMT ALVTGGSKGL GEAVVEELAM LGARVHTCAR DETQLQERLR EWQAKGFEVT TSVCDVSSRE QREKLMETVS SVFQGKLNIL
101: VNNAGTGIIK PSTEYTAEDY SFLMATNLES AFHLSQIAHP LLKASGSGSI VFMSSVAGLV HTGASIYGAS KGAMNQLGRS LACEWASDNI RVNSVCPWVI
201: TTPLTSFIFS DEKLRKAVED KTPMGRVGEA NEVSSLVAFL CFPAASYITG QTICVDGGAS VNGFSFKP

Arabidopsis Description

Tropinone reductase homolog At2g29150 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZW03]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.