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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome

Predictor Summary:
  • cytosol 1
  • peroxisome 2
  • mitochondrion 2
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:peroxisome
Any Predictor:cytosol, mitochondrion, peroxisome, plasma membrane
BaCelLo:cytosol
MultiLoc:peroxisome
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI

Inferred distinct locusB in Crop

locusBlocations
CDY40183
CDY45434

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G06060.1 CDY40183 AT2G29330.1 21798944
AT5G06060.1 CDY45434 AT2G29330.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra009159.1-P Field mustard cytosol, mitochondrion, peroxisome, plasma membrane 98.86 98.86
CDX98899 Canola peroxisome 87.79 87.79
CDY04977 Canola peroxisome 84.35 84.03
CDY14094 Canola peroxisome 83.97 83.65
AT5G06060.1 Thale cress peroxisome 83.59 82.95
CDX98898 Canola cytosol, peroxisome, plasma membrane 90.84 76.77
CDY04975 Canola mitochondrion 31.68 74.11
Solyc03g096640.2.1 Tomato mitochondrion, plastid 69.08 67.54
PGSC0003DMT400043159 Potato mitochondrion 69.08 67.29
VIT_13s0019g02180.t01 Wine grape peroxisome, plasma membrane, plastid 67.94 66.42
HORVU4Hr1G060350.3 Barley plastid 66.03 63.6
CDX86486 Canola cytosol, peroxisome, plastid 63.36 63.36
CDY09917 Canola cytosol 63.36 63.36
CDY68057 Canola cytosol 63.36 63.36
GSMUA_Achr10P... Banana cytosol 64.89 62.73
CDY06260 Canola plastid 62.6 62.6
TraesCS4A01G094400.1 Wheat plastid 64.89 62.5
CDY45434 Canola cytosol, nucleus, plastid 62.21 62.21
TraesCS4B01G210000.1 Wheat plastid 64.5 62.13
TraesCS4D01G210800.1 Wheat plastid 64.5 62.13
Zm00001d028575_P001 Maize extracellular 64.5 61.9
KRH31007 Soybean mitochondrion 63.74 61.62
CDX86485 Canola cytosol, peroxisome, plastid 61.45 61.45
CDY31772 Canola cytosol, peroxisome, plastid 61.45 61.45
CDY31773 Canola plastid 61.45 61.45
CDY40183 Canola plastid 61.45 61.45
CDY06706 Canola mitochondrion 62.21 61.28
Os03t0268900-02 Rice plastid 62.98 61.11
TraesCS4B01G209900.1 Wheat peroxisome 62.98 61.11
CDX83307 Canola peroxisome 61.07 61.07
CDY31768 Canola cytosol, peroxisome, plastid 61.07 61.07
CDY10276 Canola mitochondrion 61.83 60.9
CDY14610 Canola mitochondrion 61.83 60.9
CDY52942 Canola mitochondrion 61.83 60.9
TraesCS4A01G094500.1 Wheat cytosol, peroxisome, plastid 62.98 60.89
CDX95751 Canola peroxisome 60.69 60.69
CDX97899 Canola peroxisome 60.69 60.69
CDY40188 Canola cytosol, peroxisome, plasma membrane 60.69 60.69
Solyc03g096660.1.1 Tomato extracellular 45.04 60.51
CDY40186 Canola cytosol 47.71 60.39
CDY40165 Canola plastid 60.31 60.31
CDY45438 Canola cytosol 60.31 60.31
PGSC0003DMT400043152 Potato peroxisome 63.74 60.29
CDY64214 Canola mitochondrion 39.31 60.23
CDX83306 Canola plastid 59.92 59.92
CDY40175 Canola plasma membrane 59.92 59.92
CDY45432 Canola cytosol 59.92 59.92
CDY16437 Canola mitochondrion 60.69 59.77
VIT_13s0019g02130.t01 Wine grape peroxisome 61.07 59.7
KRH31026 Soybean cytosol, mitochondrion, peroxisome, plastid 61.83 59.56
CDX95753 Canola cytosol, peroxisome, plastid 59.54 59.54
CDY40179 Canola cytosol, peroxisome, plastid 59.16 59.39
KRH31025 Soybean plastid 62.6 59.21
CDY40182 Canola cytosol, peroxisome, plastid 59.16 59.16
CDY45435 Canola cytosol, peroxisome, plastid 59.16 59.16
Os03t0269000-01 Rice plastid 48.09 59.15
CDY62820 Canola cytosol, endoplasmic reticulum, peroxisome 59.16 58.94
CDY45441 Canola cytosol 50.38 58.93
KRG97856 Soybean mitochondrion, plastid 61.07 58.82
VIT_13s0019g02140.t01 Wine grape peroxisome 60.69 58.67
CDX97897 Canola cytosol, extracellular 51.53 58.44
CDX97893 Canola mitochondrion 59.92 57.93
CDY09823 Canola peroxisome 59.92 57.93
CDY09824 Canola mitochondrion 59.92 57.93
CDX95750 Canola cytosol 60.31 57.66
CDY40185 Canola plastid 57.63 57.63
KRG97870 Soybean mitochondrion 54.96 57.6
CDY31776 Canola cytosol, peroxisome, plastid 59.16 57.2
CDY51372 Canola plastid 60.31 56.63
CDX97895 Canola cytosol 50.76 56.6
CDY31774 Canola cytosol 50.76 56.6
CDY40171 Canola cytosol 47.33 56.11
CDY45433 Canola cytosol 51.15 54.69
OQU92858 Sorghum cytosol, peroxisome, plastid 63.36 53.9
EES08074 Sorghum plastid 61.45 53.49
CDY16436 Canola endoplasmic reticulum, vacuole 21.37 53.33
KRG97857 Soybean mitochondrion 50.76 53.2
TraesCS4D01G210700.1 Wheat plastid 63.74 52.68
VIT_13s0019g02170.t01 Wine grape mitochondrion, nucleus, peroxisome, plastid 57.25 52.63
Os03t0269100-02 Rice mitochondrion, plastid 61.83 52.6
CDY31770 Canola plastid 46.56 52.59
CDY35991 Canola plastid 24.81 52.42
KRH31021 Soybean mitochondrion 59.54 51.49
CDX95752 Canola cytosol 46.18 50.84
CDY72061 Canola cytosol 20.99 50.46
CDY40177 Canola cytosol 52.67 49.82
HORVU4Hr1G060330.1 Barley mitochondrion 58.78 48.12
CDX97890 Canola cytosol 59.92 46.31
OQU91956 Sorghum extracellular, peroxisome 49.62 40.62
CDY65683 Canola cytosol, mitochondrion 61.45 40.35
CDY35231 Canola peroxisome 17.18 36.29
CDY27447 Canola cytosol, mitochondrion, peroxisome 33.59 34.11
CDX76382 Canola cytosol, mitochondrion, peroxisome 33.21 33.85
CDY16690 Canola peroxisome 32.82 33.73
CDX94534 Canola peroxisome 32.06 32.94
CDY31767 Canola plastid 64.12 29.84
CDY43488 Canola cytosol 29.77 26.99
CDY27781 Canola cytosol, peroxisome, plastid 29.01 26.3
CDY17559 Canola cytoskeleton, nucleus, peroxisome 28.63 26.13
CDX73802 Canola peroxisome 27.48 24.16
CDY08402 Canola cytosol 27.1 24.15
CDY05152 Canola cytosol 21.76 23.85
CDY00799 Canola peroxisome 27.1 23.83
CDY50145 Canola plastid 61.45 22.24
CDY05153 Canola cytosol, nucleus, plastid 5.73 21.43
Protein Annotations
Gene3D:3.40.50.720MapMan:50.1.1GO:A0A078BZI8EnsemblPlants:CDX70101ProteinID:CDX70101ProteinID:CDX70101.1
GO:GO:0003674GO:GO:0003824GO:GO:0008150GO:GO:0008152GO:GO:0016491EnsemblPlantsGene:GSBRNA2T00136210001
InterPro:NAD(P)-bd_dom_sfPFAM:PF13561PRINTS:PR00080PRINTS:PR00081ScanProsite:PS00061PANTHER:PTHR42898
PANTHER:PTHR42898:SF3InterPro:SDR_famSUPFAM:SSF51735InterPro:Sc_DH/Rdtase_CSUniParc:UPI0004EE08DDSEG:seg
Description
BnaA10g24500D
Coordinates
chrLK031790:+:3155260..3156593
Molecular Weight (calculated)
28278.5 Da
IEP (calculated)
5.129
GRAVY (calculated)
-0.018
Length
262 amino acids
Sequence
(BLAST)
001: MESDKRWSLA GKTALVTGGT RGIGRAIVEE LARFGATVHT CSRNQEELKA CLDDWRSNGL TESGSVCDAS DRDEREKLMQ QVSSAFSGKL NILVNNVGTN
101: VWKPTVEYTS EDYAKVMSTN FESAFHFSQI AHPLLKASGV GSIVFVSSVA GLVYASAGPI YGATKGALNQ LTRNLACEWA CDNIRTNSVA PWYIKTSFVE
201: PVLENKEFMD AVVNRTPLGR VGEPEEVASL VAFLCLPAAS YITGQVIVAD GGFTVNGFNY VV
Best Arabidopsis Sequence Match ( AT5G06060.1 )
(BLAST)
001: METDKRWSLA GKTALVTGGT RGIGRAVVEE LAKFGAKVHT CSRNQEELNA CLNDWKANGL VVSGSVCDAS VRDQREKLIQ EASSAFSGKL NILINNVGTN
101: VRKPTVEYSS EEYAKIMSTN LESAFHLSQI AHPLLKASGV GSIVFISSVA GLVHLSSGSI YGATKGALNQ LTRNLACEWA SDNIRTNCVA PWYIKTSLVE
201: TLLEKKEFVE AVVSRTPLGR VGEPEEVSSL VAFLCLPASS YITGQVISVD GGFTVNGFSY AMKP
Arabidopsis Description
Tropinone reductase homolog At5g06060 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHT0]
SUBAcon: [peroxisome]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.