Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY68057 | Canola | cytosol | 96.18 | 96.18 |
| CDX86485 | Canola | cytosol, peroxisome, plastid | 89.31 | 89.31 |
| CDY09917 | Canola | cytosol | 79.01 | 79.01 |
| CDY06260 | Canola | plastid | 79.01 | 79.01 |
| CDY40188 | Canola | cytosol, peroxisome, plasma membrane | 72.9 | 72.9 |
| CDY45432 | Canola | cytosol | 72.52 | 72.52 |
| CDY31773 | Canola | plastid | 72.52 | 72.52 |
| CDY40186 | Canola | cytosol | 57.25 | 72.46 |
| CDY31772 | Canola | cytosol, peroxisome, plastid | 72.14 | 72.14 |
| CDY31768 | Canola | cytosol, peroxisome, plastid | 71.76 | 71.76 |
| CDX97897 | Canola | cytosol, extracellular | 62.6 | 71.0 |
| CDX83307 | Canola | peroxisome | 70.99 | 70.99 |
| CDX97899 | Canola | peroxisome | 70.99 | 70.99 |
| CDY40179 | Canola | cytosol, peroxisome, plastid | 70.61 | 70.88 |
| CDX95751 | Canola | peroxisome | 70.23 | 70.23 |
| CDY40185 | Canola | plastid | 70.23 | 70.23 |
| CDY45438 | Canola | cytosol | 69.85 | 69.85 |
| CDY45434 | Canola | cytosol, nucleus, plastid | 69.85 | 69.85 |
| CDX83306 | Canola | plastid | 69.85 | 69.85 |
| CDY52942 | Canola | mitochondrion | 70.61 | 69.55 |
| VIT_06s0004g05440.t01 | Wine grape | cytosol | 21.76 | 69.51 |
| CDY40165 | Canola | plastid | 69.47 | 69.47 |
| CDY62820 | Canola | cytosol, endoplasmic reticulum, peroxisome | 69.47 | 69.2 |
| CDY16437 | Canola | mitochondrion | 70.23 | 69.17 |
| CDY40175 | Canola | plasma membrane | 69.08 | 69.08 |
| CDX95753 | Canola | cytosol, peroxisome, plastid | 69.08 | 69.08 |
| CDY64214 | Canola | mitochondrion | 45.04 | 69.01 |
| CDY45441 | Canola | cytosol | 58.78 | 68.75 |
| CDY40183 | Canola | plastid | 68.7 | 68.7 |
| CDY45435 | Canola | cytosol, peroxisome, plastid | 68.32 | 68.32 |
| CDY40182 | Canola | cytosol, peroxisome, plastid | 68.32 | 68.32 |
| CDY31774 | Canola | cytosol | 61.07 | 68.09 |
| CDY06706 | Canola | mitochondrion | 69.08 | 68.05 |
| CDY45433 | Canola | cytosol | 63.36 | 67.76 |
| CDY10276 | Canola | mitochondrion | 68.7 | 67.67 |
| CDY14610 | Canola | mitochondrion | 68.7 | 67.67 |
| CDX97895 | Canola | cytosol | 60.69 | 67.66 |
| CDY40171 | Canola | cytosol | 56.49 | 66.97 |
| VIT_06s0004g05320.t01 | Wine grape | endoplasmic reticulum, peroxisome, plastid | 64.12 | 66.67 |
| VIT_06s0004g05400.t01 | Wine grape | cytosol | 28.24 | 66.67 |
| VIT_06s0004g05310.t01 | Wine grape | cytosol | 28.24 | 65.49 |
| Solyc03g096650.1.1 | Tomato | cytosol | 22.14 | 65.17 |
| CDY31770 | Canola | plastid | 57.63 | 65.09 |
| CDY14094 | Canola | peroxisome | 65.27 | 65.02 |
| CDX97893 | Canola | mitochondrion | 66.79 | 64.58 |
| CDY09823 | Canola | peroxisome | 66.79 | 64.58 |
| CDY09824 | Canola | mitochondrion | 66.79 | 64.58 |
| CDX98899 | Canola | peroxisome | 64.5 | 64.5 |
| VIT_06s0004g05370.t01 | Wine grape | peroxisome | 61.83 | 64.29 |
| CDY04977 | Canola | peroxisome | 64.5 | 64.26 |
| CDY31776 | Canola | cytosol, peroxisome, plastid | 66.03 | 63.84 |
| VIT_06s0004g05380.t01 | Wine grape | plastid | 65.65 | 63.7 |
| CDY04975 | Canola | mitochondrion | 27.1 | 63.39 |
| CDX70101 | Canola | peroxisome | 63.36 | 63.36 |
| VIT_06s0004g05430.t01 | Wine grape | mitochondrion, nucleus, peroxisome | 65.27 | 63.33 |
| CDY72061 | Canola | cytosol | 26.34 | 63.3 |
| KRH24731 | Soybean | nucleus | 63.36 | 62.17 |
| VIT_06s0004g05330.t01 | Wine grape | peroxisome | 59.92 | 61.81 |
| CDY16436 | Canola | endoplasmic reticulum, vacuole | 24.43 | 60.95 |
| CDY51372 | Canola | plastid | 64.89 | 60.93 |
| CDX95752 | Canola | cytosol | 55.34 | 60.92 |
| CDX95750 | Canola | cytosol | 63.36 | 60.58 |
| KRH24733 | Soybean | nucleus | 60.69 | 60.0 |
| CDY40177 | Canola | cytosol | 62.21 | 58.84 |
| VIT_06s0004g05360.t01 | Wine grape | cytosol, mitochondrion, plastid | 53.82 | 58.75 |
| KRH24732 | Soybean | cytosol, endoplasmic reticulum, plastid | 60.31 | 58.74 |
| VIT_06s0004g05390.t01 | Wine grape | cytosol, plasma membrane, plastid | 53.05 | 56.5 |
| KRH29740 | Soybean | cytosol | 20.23 | 54.08 |
| CDY35991 | Canola | plastid | 24.81 | 52.42 |
| VIT_06s0004g05450.t01 | Wine grape | plasma membrane | 35.88 | 52.22 |
| CDX97890 | Canola | cytosol | 65.27 | 50.44 |
| CDX98898 | Canola | cytosol, peroxisome, plasma membrane | 59.16 | 50.0 |
| GSMUA_Achr5P04570_001 | Banana | cytosol | 23.66 | 48.82 |
| CDY65683 | Canola | cytosol, mitochondrion | 71.37 | 46.87 |
| CDY31767 | Canola | plastid | 71.37 | 33.21 |
| CDY35231 | Canola | peroxisome | 14.89 | 31.45 |
| CDX94534 | Canola | peroxisome | 29.01 | 29.8 |
| CDY16690 | Canola | peroxisome | 28.63 | 29.41 |
| CDX76382 | Canola | cytosol, mitochondrion, peroxisome | 27.48 | 28.02 |
| CDY27447 | Canola | cytosol, mitochondrion, peroxisome | 27.48 | 27.91 |
| CDY27781 | Canola | cytosol, peroxisome, plastid | 29.39 | 26.64 |
| CDY50145 | Canola | plastid | 72.52 | 26.24 |
| CDY43488 | Canola | cytosol | 28.63 | 25.95 |
| CDY17559 | Canola | cytoskeleton, nucleus, peroxisome | 27.48 | 25.09 |
| CDY05152 | Canola | cytosol | 22.14 | 24.27 |
| CDY00799 | Canola | peroxisome | 25.57 | 22.48 |
| CDX73802 | Canola | peroxisome | 25.57 | 22.48 |
| CDY08402 | Canola | cytosol | 24.81 | 22.11 |
| CDY05153 | Canola | cytosol, nucleus, plastid | 4.58 | 17.14 |
Protein Annotations
| EnsemblPlants:CDX86486 | EnsemblPlantsGene:GSBRNA2T00145083001 | Gene3D:3.40.50.720 | GO:A0A078DB36 | InterPro:NAD(P)-bd_dom_sf | InterPro:SDR_fam |
| PANTHER:PTHR42898 | PANTHER:PTHR42898:SF7 | PFAM:PF13561 | PRINTS:PR00080 | PRINTS:PR00081 | ProteinID:CDX86486 |
| ProteinID:CDX86486.1 | SEG:seg | SUPFAM:SSF51735 | TMHMM:TMhelix | UniParc:UPI0004EE52A0 | MapMan:50.1.1 |
Description
BnaC08g02170D
Coordinates
chrLK031846:+:92819..94672
Molecular Weight (calculated)
28118.7 Da
IEP (calculated)
7.244
GRAVY (calculated)
0.087
Length
262 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSRWSLQGM TALVTGGARG IGYAIVEELA GFGAKIHTCD RDQTLLDECL SEWKAKGFQV TGSVCDVSSR PQRDGLMKTV SSLFSGKLNI LINNVGTLVS
101: KPTTEFTAQD FSGQIATNLE SAYHFSQLAH PLLKASGFGS IVFLSSVCGV VSSGFVSIYS LTKGGMNQLA RNLACEWASD GIRANSVAPW MTKTPLVQKR
201: LDDEKFAEAI FSRTPLGRAC EPREVASLVT FLCLPAASYI TGQTICIDGG FTVNGFSYKP EV
101: KPTTEFTAQD FSGQIATNLE SAYHFSQLAH PLLKASGFGS IVFLSSVCGV VSSGFVSIYS LTKGGMNQLA RNLACEWASD GIRANSVAPW MTKTPLVQKR
201: LDDEKFAEAI FSRTPLGRAC EPREVASLVT FLCLPAASYI TGQTICIDGG FTVNGFSYKP EV
001: MDINRWSLQG MTALVTGGSK GIGYAIVEEL VGFGARVHIC DIDETLLNEC LSGWHAKGFE VSGSICDVSS RPQRVQLMQT VSSLFGAKLN ILINNVGKYI
101: LKPTLESTAE DFSSLMATNL ESAYYISQLA HPLLKASGNG NIVFISSVTG VVSGTSTIYG VTKGALNQLA RDLACEWASD NIRANSVAPW VTATSLVQKY
201: LEDEIFAEAM FSRTPLGRAC EPREVASLVT FLCLPAASYI TGQTICIDGG FTVNGFSYKP
101: LKPTLESTAE DFSSLMATNL ESAYYISQLA HPLLKASGNG NIVFISSVTG VVSGTSTIYG VTKGALNQLA RDLACEWASD NIRANSVAPW VTATSLVQKY
201: LEDEIFAEAM FSRTPLGRAC EPREVASLVT FLCLPAASYI TGQTICIDGG FTVNGFSYKP
Arabidopsis Description
Tropinone reductase homolog At1g07450 [Source:UniProtKB/Swiss-Prot;Acc:Q8RX32]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.