CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97856
KRG97857
KRG97870
KRH22291
KRH24731
KRH24732
KRH24733
KRH27037
KRH29740
KRH31007
KRH31021
KRH31025
KRH31026

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G07440.1	KRH24731	AT2G29310.1	21798944
AT1G07440.1	KRH24732	AT2G29310.1	21798944
AT1G07440.1	KRH24733	AT2G29310.1	21798944
AT1G07440.1	KRH29740	AT2G29310.1	21798944
AT1G07450.1	KRH24731	AT2G29320.1	21798944
AT1G07450.1	KRH24732	AT2G29320.1	21798944
AT1G07450.1	KRH24733	AT2G29320.1	21798944
AT1G07450.1	KRH29740	AT2G29320.1	21798944
AT1G07450.1	KRH24731	AT2G29350.1	21798944
AT1G07450.1	KRH24732	AT2G29350.1	21798944
AT1G07450.1	KRH24733	AT2G29350.1	21798944
AT1G07450.1	KRH29740	AT2G29350.1	21798944
AT2G29310.1	KRH24731	AT1G07450.1	21798944
AT2G29310.1	KRH24732	AT1G07450.1	21798944
AT2G29310.1	KRH24733	AT1G07450.1	21798944
AT2G29310.1	KRH29740	AT1G07450.1	21798944
AT2G29310.1	KRH24731	AT2G29310.1	21798944
AT2G29310.1	KRH24732	AT2G29310.1	21798944
AT2G29310.1	KRH24733	AT2G29310.1	21798944
AT2G29310.1	KRH29740	AT2G29310.1	21798944
AT2G29320.1	KRH24731	AT2G29310.1	21798944
AT2G29320.1	KRH24732	AT2G29310.1	21798944
AT2G29320.1	KRH24733	AT2G29310.1	21798944
AT2G29320.1	KRH29740	AT2G29310.1	21798944
AT2G29330.1	KRH24731	AT2G29320.1	21798944
AT2G29330.1	KRH24732	AT2G29320.1	21798944
AT2G29330.1	KRH24733	AT2G29320.1	21798944
AT2G29330.1	KRH29740	AT2G29320.1	21798944
AT2G29340.1	KRH22291	AT2G42580.1	19000166
AT2G29340.1	KRH27037	AT2G42580.1	19000166
AT2G29350.1	KRH24731	AT2G29310.1	21798944
AT2G29350.1	KRH24732	AT2G29310.1	21798944
AT2G29350.1	KRH24733	AT2G29310.1	21798944
AT2G29350.1	KRH29740	AT2G29310.1	21798944
AT2G29350.1	KRH24731	AT2G29320.1	21798944
AT2G29350.1	KRH24732	AT2G29320.1	21798944
AT2G29350.1	KRH24733	AT2G29320.1	21798944
AT2G29350.1	KRH29740	AT2G29320.1	21798944
AT2G29350.1	KRH24731	AT2G29350.1	21798944
AT2G29350.1	KRH24732	AT2G29350.1	21798944
AT2G29350.1	KRH24733	AT2G29350.1	21798944
AT2G29350.1	KRH29740	AT2G29350.1	21798944
AT2G29350.1	KRH24731	AT2G29360.1	21798944
AT2G29350.1	KRH24732	AT2G29360.1	21798944
AT2G29350.1	KRH24733	AT2G29360.1	21798944
AT2G29350.1	KRH29740	AT2G29360.1	21798944
AT2G29350.1	KRG97856	AT5G06060.1	21798944
AT2G29350.1	KRG97857	AT5G06060.1	21798944
AT2G29350.1	KRG97870	AT5G06060.1	21798944
AT2G29350.1	KRH31007	AT5G06060.1	21798944
AT2G29350.1	KRH31021	AT5G06060.1	21798944
AT2G29350.1	KRH31025	AT5G06060.1	21798944
AT2G29350.1	KRH31026	AT5G06060.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24732	Soybean	cytosol, endoplasmic reticulum, plastid	83.02	81.78
KRH24731	Soybean	nucleus	81.89	81.27
KRH29740	Soybean	cytosol	29.43	79.59
Solyc03g096650.1.1	Tomato	cytosol	21.89	65.17
VIT_06s0004g05440.t01	Wine grape	cytosol	19.62	63.41
VIT_06s0004g05320.t01	Wine grape	endoplasmic reticulum, peroxisome, plastid	59.25	62.3
AT2G29350.1	Thale cress	plastid	63.02	62.08
Bra030683.1-P	Field mustard	cytosol, mitochondrion, plastid	61.13	61.83
Bra039973.1-P	Field mustard	plastid	61.13	61.83
CDX86485	Canola	cytosol, peroxisome, plastid	61.13	61.83
AT2G29360.1	Thale cress	cytosol	63.02	61.62
AT2G29290.2	Thale cress	plastid	60.75	61.45
CDY68057	Canola	cytosol	60.75	61.45
VIT_06s0004g05400.t01	Wine grape	cytosol	25.66	61.26
Bra018399.1-P	Field mustard	cytosol, peroxisome, plastid	60.38	61.07
Bra018400.1-P	Field mustard	cytosol, nucleus, plastid	60.38	61.07
CDY31773	Canola	plastid	60.38	61.07
CDY40182	Canola	cytosol, peroxisome, plastid	60.38	61.07
CDY45435	Canola	cytosol, peroxisome, plastid	60.38	61.07
Bra039976.1-P	Field mustard	cytosol	62.26	60.89
CDY31776	Canola	cytosol, peroxisome, plastid	62.26	60.89
AT2G29170.1	Thale cress	cytosol	24.53	60.75
VIT_06s0004g05380.t01	Wine grape	plastid	61.89	60.74
AT2G30670.1	Thale cress	cytosol, nucleus, peroxisome	60.0	60.69
Bra031575.1-P	Field mustard	plastid	60.0	60.69
Bra039971.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	60.0	60.69
CDX86486	Canola	cytosol, peroxisome, plastid	60.0	60.69
CDY09917	Canola	cytosol	60.0	60.69
CDY40188	Canola	cytosol, peroxisome, plasma membrane	60.0	60.69
CDY45434	Canola	cytosol, nucleus, plastid	60.0	60.69
AT1G07440.1	Thale cress	mitochondrion	60.75	60.53
VIT_06s0004g05430.t01	Wine grape	mitochondrion, nucleus, peroxisome	61.51	60.37
Bra018391.1-P	Field mustard	cytosol	59.62	60.31
Bra039967.1-P	Field mustard	plastid	59.62	60.31
CDX83307	Canola	peroxisome	59.62	60.31
CDY06260	Canola	plastid	59.62	60.31
CDY31768	Canola	cytosol, peroxisome, plastid	59.62	60.31
CDY31772	Canola	cytosol, peroxisome, plastid	59.62	60.31
CDY09823	Canola	peroxisome	61.51	60.15
AT2G29150.1	Thale cress	peroxisome	60.75	60.07
Bra018393.1-P	Field mustard	cytosol	59.25	59.92
Bra039513.1-P	Field mustard	peroxisome	59.25	59.92
CDX95751	Canola	peroxisome	59.25	59.92
CDY40183	Canola	plastid	59.25	59.92
CDY45432	Canola	cytosol	59.25	59.92
CDY40186	Canola	cytosol	46.79	59.9
CDX97893	Canola	mitochondrion	61.13	59.78
CDY09824	Canola	mitochondrion	61.13	59.78
AT1G07450.1	Thale cress	cytosol, nucleus, peroxisome	58.49	59.62
AT2G29310.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	58.87	59.54
Bra000477.1-P	Field mustard	plastid	58.87	59.54
Bra039514.1-P	Field mustard	cytosol, peroxisome, plastid	58.87	59.54
CDX83306	Canola	plastid	58.87	59.54
CDY40165	Canola	plastid	58.87	59.54
CDY40185	Canola	plastid	58.87	59.54
Bra018402.1-P	Field mustard	cytosol	49.06	59.36
Bra000476.1-P	Field mustard	cytosol, peroxisome, plastid	58.49	59.16
Bra018405.1-P	Field mustard	cytosol	58.49	59.16
CDX95753	Canola	cytosol, peroxisome, plastid	58.49	59.16
CDX97899	Canola	peroxisome	58.49	59.16
CDY40175	Canola	plasma membrane	58.49	59.16
Bra039755.1-P	Field mustard	mitochondrion	59.25	59.02
CDY16437	Canola	mitochondrion	59.25	59.02
Bra039974.1-P	Field mustard	cytosol, plasma membrane, plastid	58.49	58.94
CDY62820	Canola	cytosol, endoplasmic reticulum, peroxisome	58.49	58.94
Bra018401.1-P	Field mustard	cytosol	56.23	58.89
CDX97897	Canola	cytosol, extracellular	51.32	58.87
AT2G29330.1	Thale cress	cytosol, peroxisome, plastid	57.74	58.85
Bra018396.1-P	Field mustard	cytosol	58.11	58.78
CDY45438	Canola	cytosol	58.11	58.78
Bra015580.1-P	Field mustard	mitochondrion	58.87	58.65
CDY06706	Canola	mitochondrion	58.87	58.65
CDY52942	Canola	mitochondrion	58.87	58.65
Bra018404.1-P	Field mustard	cytosol	41.13	58.6
AT2G29370.1	Thale cress	peroxisome	59.25	58.58
CDY64214	Canola	mitochondrion	37.74	58.48
KRH31026	Soybean	cytosol, mitochondrion, peroxisome, plastid	60.0	58.46
VIT_06s0004g05310.t01	Wine grape	cytosol	24.91	58.41
Bra027962.1-P	Field mustard	cytosol	38.11	58.38
CDX97895	Canola	cytosol	51.7	58.3
CDY31774	Canola	cytosol	51.7	58.3
CDY10276	Canola	mitochondrion	58.49	58.27
CDY14610	Canola	mitochondrion	58.49	58.27
CDY40179	Canola	cytosol, peroxisome, plastid	57.36	58.24
Bra039969.1-P	Field mustard	cytosol	57.74	58.17
KRG97856	Soybean	mitochondrion, plastid	59.62	58.09
CDY72061	Canola	cytosol	23.77	57.8
AT2G29320.1	Thale cress	mitochondrion	58.49	57.62
CDY45441	Canola	cytosol	48.68	57.59
VIT_06s0004g05370.t01	Wine grape	peroxisome	54.72	57.54
VIT_06s0004g05330.t01	Wine grape	peroxisome	55.09	57.48
CDY51372	Canola	plastid	60.38	57.35
KRH31025	Soybean	plastid	59.62	57.04
CDX95750	Canola	cytosol	58.87	56.93
CDY40171	Canola	cytosol	47.17	56.56
KRH00026	Soybean	cytosol, mitochondrion, peroxisome	56.23	56.44
CDY45433	Canola	cytosol	52.08	56.33
KRH31007	Soybean	mitochondrion	57.36	56.09
KRH00030	Soybean	cytosol	55.47	55.26
Bra039977.1-P	Field mustard	plastid	40.0	54.92
VIT_06s0004g05360.t01	Wine grape	cytosol, mitochondrion, plastid	49.06	54.17
CDY31770	Canola	plastid	47.17	53.88
KRH49153	Soybean	cytosol	53.96	53.76
KRH49151	Soybean	mitochondrion	53.21	53.21
KRG97870	Soybean	mitochondrion	50.19	53.2
KRH00029	Soybean	peroxisome	19.62	53.06
AT2G29300.2	Thale cress	extracellular	56.98	52.8
KRH49156	Soybean	plastid	33.96	52.63
Bra039966.1-P	Field mustard	cytosol	56.98	52.43
CDY16436	Canola	endoplasmic reticulum, vacuole	20.75	52.38
CDX95752	Canola	cytosol	46.79	52.1
GSMUA_Achr5P04570_001	Banana	cytosol	24.91	51.97
AT2G29340.1	Thale cress	cytosol, endoplasmic reticulum, peroxisome	60.0	51.79
KRH24734	Soybean	extracellular, plasma membrane, vacuole	22.26	51.75
KRH31021	Soybean	mitochondrion	58.49	51.16
KRG97857	Soybean	mitochondrion	47.92	50.8
VIT_06s0004g05390.t01	Wine grape	cytosol, plasma membrane, plastid	46.79	50.41
KRH29741	Soybean	plastid	57.74	49.84
CDY40177	Canola	cytosol	51.32	49.1
VIT_06s0004g05450.t01	Wine grape	plasma membrane	32.83	48.33
KRH49152	Soybean	cytosol	52.45	47.12
CDX97890	Canola	cytosol	59.25	46.31
KRH00032	Soybean	cytosol, peroxisome, plastid	30.57	45.0
Bra027961.1-P	Field mustard	cytosol	49.06	42.9
CDY65683	Canola	cytosol, mitochondrion	57.74	38.35
KRH02005	Soybean	endoplasmic reticulum, nucleus	30.94	32.54
KRH36525	Soybean	endoplasmic reticulum	29.81	30.98
KRH11511	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	29.06	30.2
CDY31767	Canola	plastid	62.64	29.48
KRG92837	Soybean	endoplasmic reticulum, nucleus	28.68	25.94
KRH33956	Soybean	endoplasmic reticulum	28.3	25.6
KRG96884	Soybean	cytosol	28.3	25.42
KRH68615	Soybean	cytosol, nucleus, plastid	21.13	25.34
KRH68572	Soybean	cytosol	26.79	23.67
KRH68573	Soybean	cytosol	24.53	23.64
KRH70902	Soybean	cytosol	9.81	23.64
KRH51046	Soybean	cytosol, peroxisome, plastid	28.3	23.51
KRH13054	Soybean	nucleus	26.04	23.15
KRH44885	Soybean	nucleus	26.04	23.15
CDY50145	Canola	plastid	60.75	22.24

Protein Annotations

EntrezGene:100787037	Gene3D:3.40.50.720	MapMan:50.1.1	EMBL:ACUP02007184	EnsemblPlantsGene:GLYMA_12G059300	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	UniProt:I1LQL3
EnsemblPlants:KRH24733	ProteinID:KRH24733	ProteinID:KRH24733.1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF13561	PRINTS:PR00080
PRINTS:PR00081	ScanProsite:PS00061	PANTHER:PTHR42898	PANTHER:PTHR42898:SF7	InterPro:SDR_fam	SUPFAM:SSF51735
InterPro:Sc_DH/Rdtase_CS	TMHMM:TMhelix	UniParc:UPI000233CB8A	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:4289989..4292215

Molecular Weight (calculated)

28479.0 Da

IEP (calculated)

4.925

GRAVY (calculated)

0.098

Length

265 amino acids

Sequence
(BLAST)

001: MAEPNIASRW SLQGMTALVT GGSKGIGYAI VEELAQLGAT VHTCARNEAE LNESLNEWNT KGYRVTGSVC DVASRAERQD LIARLSSEFN GKLNILVNNV
101: GTNIWKDLLE YTEEDFLFLV NTNLQSAFHL CQLAHPLLKA SEAASIVFIS SIGGVVSINL GSVVYSATKG AMNQMTKNLA CEWAKDNIRT NCVAPGMIRT
201: PAADEYLKEG KIANAYIPRT PLGRFGEGDE VSSVVAFLCL PAASYVTGQI ICVDGGFTVN GLYIS

Best Arabidopsis Sequence Match ( AT2G29350.1 )
(BLAST)

001: MAKEGGLGEN SRWSLGGMTA LVTGGSKGIG EAVVEELAML GAKVHTCARD ETQLQERLRE WQAKGFQVTT SVCDVSSRDQ RVKLMETVSS LYQGKLNILV
101: NNVGTSIFKP TTEYTAEDFS FVMATNLESA FHLSQLAHPL LKASGSGSIV LISSAAGVVH VNVGSIYGAT KGAMNQLARN LACEWASDNI RTNSVCPWYI
201: TTPLSNDFFD EEFKKEAVRT TPMGRVGEAN EVSPLVAFLC LPSASYITGQ TICVDGGATV NGFSFKTMP

Arabidopsis Description

SAG13SAG13 [Source:UniProtKB/TrEMBL;Acc:A0A178VTS8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.